Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10078463	0.85[EUR][1000 genomes]
rs11952924	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs12655252	0.82[ASN][1000 genomes]
rs12658070	0.85[EUR][1000 genomes]
rs13174784	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs28605895	0.84[EUR][1000 genomes]
rs58628353	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6600954	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs6600955	0.90[CHB][hapmap]
rs6600956	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs6600960	0.88[EUR][1000 genomes]
rs6861545	0.94[EUR][1000 genomes]
rs6867346	0.84[ASN][1000 genomes]
rs6877165	0.82[CEU][hapmap]
rs6881428	0.84[ASN][1000 genomes]
rs73324156	0.83[EUR][1000 genomes]
rs73324174	0.89[ASN][1000 genomes]
rs73341553	0.82[ASN][1000 genomes]
rs7444422	1.00[CHB][hapmap]
rs7706887	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7713247	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7715917	0.88[EUR][1000 genomes]
rs7722026	1.00[CHB][hapmap]
rs7725396	1.00[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs7733056	1.00[CHB][hapmap];0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031206	chr5:178149292-178283614	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv537973	chr5:178149292-178283614	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178236800-178255800	Weak transcription	K562	blood
2	chr5:178241200-178252400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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