Variant report

Variant	rs12655252
Chromosome Location	chr5:178232472-178232473
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11952919	0.86[ASN][1000 genomes]
rs11952924	0.86[ASN][1000 genomes]
rs11956290	0.86[ASN][1000 genomes]
rs11957056	0.86[ASN][1000 genomes]
rs12658342	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs34180938	0.86[ASN][1000 genomes]
rs4701068	0.87[ASN][1000 genomes]
rs58628353	0.82[ASN][1000 genomes]
rs61469010	0.88[ASN][1000 genomes]
rs6600954	0.85[ASN][1000 genomes]
rs6600956	0.86[ASN][1000 genomes]
rs6600957	0.86[ASN][1000 genomes]
rs6862477	0.86[ASN][1000 genomes]
rs6867346	0.84[ASN][1000 genomes]
rs6874045	0.89[ASN][1000 genomes]
rs6881428	0.84[ASN][1000 genomes]
rs73324174	0.93[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs73341509	0.88[ASN][1000 genomes]
rs73341510	0.87[ASN][1000 genomes]
rs73341513	0.89[ASN][1000 genomes]
rs73341521	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs73341529	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs73341553	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7444422	0.95[ASN][1000 genomes]
rs7447672	0.86[ASN][1000 genomes]
rs7706132	0.82[ASN][1000 genomes]
rs7706887	0.91[ASN][1000 genomes]
rs7711944	0.86[ASN][1000 genomes]
rs7713247	0.86[ASN][1000 genomes]
rs7720287	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7722026	0.92[ASN][1000 genomes]
rs7725396	0.93[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7733056	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031666	chr5:177988601-178236068	Bivalent/Poised TSS Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1031206	chr5:178149292-178283614	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv537973	chr5:178149292-178283614	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv462573	chr5:178180299-178241495	Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv600452	chr5:178180299-178241495	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178231000-178235800	Weak transcription	K562	blood
2	chr5:178232400-178232600	Enhancers	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links