Variant report

Variant	rs73341513
Chromosome Location	chr5:178215622-178215623
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:177657932..177660784-chr5:178214332..178216670,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175309	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11952919	0.96[ASN][1000 genomes]
rs11952924	0.96[ASN][1000 genomes]
rs11956290	0.96[ASN][1000 genomes]
rs11957056	0.96[ASN][1000 genomes]
rs12655252	0.89[ASN][1000 genomes]
rs12658342	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34180938	0.96[ASN][1000 genomes]
rs4701068	0.95[ASN][1000 genomes]
rs61469010	0.99[ASN][1000 genomes]
rs6600954	0.95[ASN][1000 genomes]
rs6600956	0.96[ASN][1000 genomes]
rs6600957	0.96[ASN][1000 genomes]
rs6862477	0.91[ASN][1000 genomes]
rs6867346	0.86[EUR][1000 genomes]
rs6874045	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6881428	0.86[EUR][1000 genomes]
rs73324174	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73341509	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73341510	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73341521	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73341529	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73341531	0.82[AFR][1000 genomes]
rs73341553	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7444422	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7447672	0.96[ASN][1000 genomes]
rs7706887	0.81[ASN][1000 genomes]
rs7711944	0.96[ASN][1000 genomes]
rs7713247	0.96[ASN][1000 genomes]
rs7720287	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7722026	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7725396	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7733056	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031666	chr5:177988601-178236068	Bivalent/Poised TSS Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1031206	chr5:178149292-178283614	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv537973	chr5:178149292-178283614	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv462573	chr5:178180299-178241495	Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv600452	chr5:178180299-178241495	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178166600-178224000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:178206400-178217600	Weak transcription	Gastric	stomach
3	chr5:178210600-178217400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:178213200-178215800	Enhancers	Placenta Amnion	Placenta Amnion
5	chr5:178213200-178215800	Enhancers	Stomach Mucosa	stomach
6	chr5:178213800-178216000	Enhancers	Placenta	Placenta
7	chr5:178214400-178215800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:178214800-178216400	Enhancers	Esophagus	oesophagus
9	chr5:178215600-178215800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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