Variant report

Variant	rs7706180
Chromosome Location	chr5:113640906-113640907
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10061203	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11241273	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1124188	0.98[ASN][1000 genomes]
rs12654468	0.84[EUR][1000 genomes]
rs28446249	0.84[EUR][1000 genomes]
rs56398861	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs566336	0.82[ASN][1000 genomes]
rs67027308	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs672894	0.82[ASN][1000 genomes]
rs685193	0.81[ASN][1000 genomes]
rs6874042	0.84[EUR][1000 genomes]
rs6895526	0.84[EUR][1000 genomes]
rs6897769	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7722174	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7731333	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9326921	0.82[EUR][1000 genomes]
rs9326922	0.83[EUR][1000 genomes]
rs9326924	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024203	chr5:113596392-113659935	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1021335	chr5:113599444-113659146	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv537866	chr5:113599444-113659146	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7706180	YTHDC2	cis	cerebellum	SCAN
rs7706180	TRIM36	cis	parietal	SCAN
rs7706180	CDO1	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113637400-113643800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:113638800-113641200	Weak transcription	Fetal Heart	heart
3	chr5:113640800-113641400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:113640800-113642000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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