Variant report

Variant	rs685193
Chromosome Location	chr5:113652131-113652132
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10061203	0.87[ASN][1000 genomes]
rs1124188	0.83[ASN][1000 genomes]
rs12654468	0.86[ASN][1000 genomes]
rs28446249	0.90[ASN][1000 genomes]
rs566336	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67027308	0.80[ASN][1000 genomes]
rs672894	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6874042	0.91[ASN][1000 genomes]
rs6874235	0.91[ASN][1000 genomes]
rs6895526	0.91[ASN][1000 genomes]
rs6897769	0.83[ASN][1000 genomes]
rs7706180	0.81[ASN][1000 genomes]
rs7731333	0.83[ASN][1000 genomes]
rs9326921	0.91[ASN][1000 genomes]
rs9326922	0.91[ASN][1000 genomes]
rs9326923	0.90[ASN][1000 genomes]
rs9326924	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024203	chr5:113596392-113659935	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1021335	chr5:113599444-113659146	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv537866	chr5:113599444-113659146	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113649000-113653400	Weak transcription	Fetal Heart	heart
2	chr5:113649800-113657000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr5:113650600-113652200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:113650800-113655000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr5:113651800-113654000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:113652000-113652400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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