Variant report

Variant	rs9326923
Chromosome Location	chr5:113657391-113657392
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1124188	0.80[AMR][1000 genomes]
rs12654468	0.93[ASN][1000 genomes]
rs28446249	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3104222	0.84[ASN][1000 genomes]
rs566336	0.86[ASN][1000 genomes]
rs672894	0.86[ASN][1000 genomes]
rs685193	0.90[ASN][1000 genomes]
rs6874042	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6874235	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6895526	0.81[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9326921	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9326922	0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9326924	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024203	chr5:113596392-113659935	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1021335	chr5:113599444-113659146	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv537866	chr5:113599444-113659146	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113653200-113657400	Enhancers	HUVEC	blood vessel
2	chr5:113653600-113658200	Weak transcription	Right Ventricle	heart
3	chr5:113657000-113657800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr5:113657200-113660000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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