Variant report

Variant	rs6874235
Chromosome Location	chr5:113654867-113654868
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10061203	0.81[ASN][1000 genomes]
rs1124188	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12654468	0.94[ASN][1000 genomes]
rs28446249	0.80[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs3104222	0.83[ASN][1000 genomes]
rs566336	0.87[ASN][1000 genomes]
rs672894	0.87[ASN][1000 genomes]
rs685193	0.91[ASN][1000 genomes]
rs6874042	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6895526	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9326921	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9326922	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9326923	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9326924	0.84[AFR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024203	chr5:113596392-113659935	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1021335	chr5:113599444-113659146	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv537866	chr5:113599444-113659146	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113649800-113657000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:113650800-113655000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr5:113653200-113657400	Enhancers	HUVEC	blood vessel
4	chr5:113653600-113658200	Weak transcription	Right Ventricle	heart
5	chr5:113654000-113655400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr5:113654600-113655200	Enhancers	Left Ventricle	heart
7	chr5:113654800-113655000	Enhancers	Right Atrium	heart
8	chr5:113654800-113655200	Enhancers	Lung	lung
9	chr5:113654800-113655400	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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