Variant report

Variant	rs7708899
Chromosome Location	chr5:74332977-74332978
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:74266271..74268697-chr5:74331711..74333363,2	MCF-7	breast:
2	chr5:74330454..74335475-chr5:74336350..74340630,5	MCF-7	breast:
3	chr5:74331704..74333232-chr5:74343101..74344687,2	MCF-7	breast:
4	chr5:74332922..74335648-chr5:74338677..74341293,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16872349	1.00[JPT][hapmap]
rs16872362	1.00[JPT][hapmap]
rs55678791	0.98[EUR][1000 genomes]
rs56858051	0.88[EUR][1000 genomes]
rs60269760	1.00[EUR][1000 genomes]
rs6861101	0.88[CEU][hapmap];0.84[GIH][hapmap];0.89[EUR][1000 genomes]
rs6861935	1.00[JPT][hapmap]
rs73125247	0.89[EUR][1000 genomes]
rs73765651	1.00[EUR][1000 genomes]
rs7730062	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7731533	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830352	chr5:74189495-74337944	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74313600-74341800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:74317600-74344200	Weak transcription	Ovary	ovary
3	chr5:74322800-74334400	Weak transcription	Aorta	Aorta
4	chr5:74324400-74333600	Strong transcription	Thymus	Thymus
5	chr5:74327400-74333200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr5:74328000-74339400	Weak transcription	Fetal Stomach	stomach
7	chr5:74328600-74333000	Weak transcription	Pancreas	Pancrea
8	chr5:74328600-74345600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:74328800-74333200	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr5:74329200-74334200	Enhancers	Stomach Mucosa	stomach
11	chr5:74329200-74346800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr5:74329600-74338000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr5:74329800-74334800	Strong transcription	Duodenum Mucosa	Duodenum
14	chr5:74329800-74344400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr5:74330000-74339800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr5:74330000-74344400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr5:74330400-74339400	Weak transcription	Gastric	stomach
18	chr5:74330400-74340400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr5:74330400-74341800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr5:74330400-74344200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr5:74330600-74333200	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr5:74330600-74333400	Strong transcription	Fetal Thymus	thymus
23	chr5:74330600-74337200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr5:74330600-74339400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr5:74330600-74339400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr5:74330600-74339600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr5:74330600-74339600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr5:74330600-74341800	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr5:74330600-74342600	Weak transcription	Colon Smooth Muscle	Colon
30	chr5:74330600-74345400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr5:74330600-74348000	Weak transcription	Primary hematopoietic stem cells	blood
32	chr5:74331000-74333200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr5:74331400-74333200	Genic enhancers	Primary T cells from cord blood	blood
34	chr5:74331400-74333200	Strong transcription	Fetal Intestine Large	intestine
35	chr5:74331400-74345400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr5:74331400-74345600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr5:74331600-74333000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr5:74331600-74333000	Weak transcription	Fetal Intestine Small	intestine
39	chr5:74331600-74333400	Weak transcription	Placenta	Placenta
40	chr5:74331600-74339800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr5:74331600-74344000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr5:74331600-74347000	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr5:74332000-74333000	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr5:74332000-74334000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr5:74332200-74333400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
46	chr5:74332200-74334000	Enhancers	HMEC	breast
47	chr5:74332400-74333200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr5:74332400-74333400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr5:74332400-74333400	Enhancers	Hela-S3	cervix
50	chr5:74332400-74333600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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