Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs4487475	0.92[EUR][1000 genomes]
rs4504370	1.00[CEU][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4551046	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4593249	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56778680	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57127117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57261866	0.83[EUR][1000 genomes]
rs59346405	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs59384623	0.92[EUR][1000 genomes]
rs6860875	0.83[EUR][1000 genomes]
rs6869217	0.93[EUR][1000 genomes]
rs6869249	0.83[EUR][1000 genomes]
rs6883150	0.83[EUR][1000 genomes]
rs6887521	0.91[CEU][hapmap];0.82[MEX][hapmap];0.83[EUR][1000 genomes]
rs73110977	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73110980	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73110999	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73112721	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73122553	0.87[AFR][1000 genomes]
rs73122556	0.85[AFR][1000 genomes]
rs73122560	0.85[AFR][1000 genomes]
rs73122563	0.85[AFR][1000 genomes]
rs73765654	0.93[EUR][1000 genomes]
rs7721887	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830352	chr5:74189495-74337944	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74302200-74303600	Enhancers	H1 Cell Line	embryonic stem cell
2	chr5:74302200-74304600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:74302400-74303600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr5:74302400-74303600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr5:74302400-74303800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:74302400-74304400	Enhancers	H9 Cell Line	embryonic stem cell
7	chr5:74302600-74303200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr5:74302600-74303200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr5:74302600-74303600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:74302600-74303600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr5:74302600-74303600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr5:74302800-74303400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr5:74302800-74303600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr5:74302800-74303600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr5:74302800-74303600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr5:74302800-74305600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr5:74303000-74303800	Weak transcription	NHDF-Ad	bronchial
18	chr5:74303000-74306200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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