Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs4487475	0.90[EUR][1000 genomes]
rs4504370	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4551046	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4593249	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56778680	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57127117	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs57261866	0.82[EUR][1000 genomes]
rs59384623	0.90[EUR][1000 genomes]
rs6860875	0.82[EUR][1000 genomes]
rs6869217	0.92[EUR][1000 genomes]
rs6869249	0.81[EUR][1000 genomes]
rs6883150	0.81[EUR][1000 genomes]
rs6887521	0.82[EUR][1000 genomes]
rs73110977	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73110980	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73110999	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73112721	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73122553	0.91[AFR][1000 genomes]
rs73122556	0.90[AFR][1000 genomes]
rs73122560	0.90[AFR][1000 genomes]
rs73122563	0.90[AFR][1000 genomes]
rs73765654	0.92[EUR][1000 genomes]
rs7721887	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7731533	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830352	chr5:74189495-74337944	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74303600-74316000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:74313400-74314600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr5:74313600-74318200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:74313600-74341800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:74314200-74315200	Enhancers	NHDF-Ad	bronchial

Quick Search: