Variant report

Variant	rs6883150
Chromosome Location	chr5:74298636-74298637
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs4504370	0.83[EUR][1000 genomes]
rs4551046	0.81[EUR][1000 genomes]
rs4593249	0.81[EUR][1000 genomes]
rs57127117	0.83[EUR][1000 genomes]
rs59346405	0.81[EUR][1000 genomes]
rs6869217	0.89[EUR][1000 genomes]
rs6869249	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6883310	1.00[ASN][1000 genomes]
rs73110977	0.83[EUR][1000 genomes]
rs73110980	0.83[EUR][1000 genomes]
rs73110999	0.83[EUR][1000 genomes]
rs7721887	0.83[EUR][1000 genomes]
rs7731533	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830352	chr5:74189495-74337944	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74297800-74298800	Enhancers	Liver	Liver
2	chr5:74297800-74299000	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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