Variant report

Variant	rs6887521
Chromosome Location	chr5:74289267-74289268
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs4504370	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs4551046	0.82[EUR][1000 genomes]
rs4593249	0.82[EUR][1000 genomes]
rs57127117	0.83[EUR][1000 genomes]
rs57261866	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59346405	0.82[EUR][1000 genomes]
rs60623068	1.00[ASN][1000 genomes]
rs6860875	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6869217	0.90[EUR][1000 genomes]
rs72766577	1.00[ASN][1000 genomes]
rs73110977	0.83[EUR][1000 genomes]
rs73110980	0.83[EUR][1000 genomes]
rs73110999	0.83[EUR][1000 genomes]
rs7721887	0.83[EUR][1000 genomes]
rs7731533	0.91[CEU][hapmap];0.82[MEX][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830352	chr5:74189495-74337944	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74261800-74290400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:74286000-74289800	Enhancers	Pancreas	Pancrea
3	chr5:74287800-74297800	Weak transcription	HepG2	liver
4	chr5:74288000-74289400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:74288000-74289600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:74288000-74289800	Enhancers	NHEK	skin
7	chr5:74288200-74289800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:74288200-74289800	Enhancers	HMEC	breast
9	chr5:74289200-74289800	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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