Variant report

Variant	rs72766577
Chromosome Location	chr5:74258883-74258884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs4565192	0.92[EUR][1000 genomes]
rs57261866	1.00[ASN][1000 genomes]
rs59473915	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60623068	1.00[ASN][1000 genomes]
rs6860875	1.00[ASN][1000 genomes]
rs6880176	0.92[EUR][1000 genomes]
rs6887521	1.00[ASN][1000 genomes]
rs6895289	0.86[EUR][1000 genomes]
rs72766559	0.86[EUR][1000 genomes]
rs72766579	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830352	chr5:74189495-74337944	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74246200-74259200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:74253600-74261400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:74253600-74269200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:74254200-74262600	Weak transcription	Pancreas	Pancrea
5	chr5:74255000-74272600	Weak transcription	Gastric	stomach
6	chr5:74255200-74259200	Weak transcription	Small Intestine	intestine
7	chr5:74256000-74261800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr5:74258000-74259000	Weak transcription	NHEK	skin
9	chr5:74258800-74259600	Enhancers	Fetal Intestine Small	intestine
10	chr5:74258800-74259800	Enhancers	Fetal Intestine Large	intestine
11	chr5:74258800-74259800	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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