Variant report

Variant	rs72766559
Chromosome Location	chr5:74245512-74245513
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs4565192	0.93[EUR][1000 genomes]
rs59473915	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6880176	0.93[EUR][1000 genomes]
rs6895289	0.80[EUR][1000 genomes]
rs72766577	0.86[EUR][1000 genomes]
rs72766579	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830352	chr5:74189495-74337944	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74241400-74245600	Enhancers	NHDF-Ad	bronchial
2	chr5:74241400-74246200	Enhancers	HepG2	liver
3	chr5:74241600-74248000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:74243600-74245800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr5:74243600-74246000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr5:74243600-74247400	Enhancers	Osteobl	bone
7	chr5:74244000-74246200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr5:74244000-74246400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:74244200-74245800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:74244200-74253400	Weak transcription	Aorta	Aorta
11	chr5:74244400-74245600	Enhancers	Liver	Liver
12	chr5:74244400-74247400	Weak transcription	Small Intestine	intestine
13	chr5:74244400-74249400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr5:74244400-74249800	Weak transcription	Ovary	ovary
15	chr5:74244400-74249800	Weak transcription	HSMM	muscle
16	chr5:74244600-74245600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr5:74244600-74245800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr5:74244600-74246000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr5:74244600-74246000	Enhancers	Fetal Kidney	kidney
20	chr5:74244600-74246200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr5:74244600-74246200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr5:74244600-74247800	Weak transcription	Pancreas	Pancrea
23	chr5:74244600-74248400	Weak transcription	Placenta	Placenta
24	chr5:74244600-74249800	Weak transcription	Gastric	stomach
25	chr5:74244600-74249800	Weak transcription	Spleen	Spleen
26	chr5:74244600-74250000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr5:74244600-74251600	Enhancers	NHLF	lung
28	chr5:74244800-74245600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr5:74244800-74245800	Weak transcription	Stomach Mucosa	stomach
30	chr5:74244800-74246000	Weak transcription	Fetal Intestine Small	intestine
31	chr5:74244800-74247800	Weak transcription	Fetal Stomach	stomach
32	chr5:74245000-74246400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr5:74245200-74245800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr5:74245200-74246200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr5:74245200-74246200	Enhancers	Pancreatic Islets	Pancreatic Islet
36	chr5:74245200-74248400	Weak transcription	Fetal Lung	lung
37	chr5:74245400-74247000	Enhancers	NH-A	brain
38	chr5:74245400-74256000	Enhancers	Fetal Intestine Large	intestine

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