Variant report

Variant	rs72766579
Chromosome Location	chr5:74262131-74262132
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs4565192	0.88[EUR][1000 genomes]
rs59473915	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6880176	0.88[EUR][1000 genomes]
rs6895289	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72766559	0.83[EUR][1000 genomes]
rs72766577	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830352	chr5:74189495-74337944	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74253600-74269200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:74254200-74262600	Weak transcription	Pancreas	Pancrea
3	chr5:74255000-74272600	Weak transcription	Gastric	stomach
4	chr5:74259800-74262600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:74260800-74269000	Enhancers	Stomach Mucosa	stomach
6	chr5:74261400-74262200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:74261400-74268600	Enhancers	Fetal Intestine Large	intestine
8	chr5:74261600-74268000	Enhancers	Fetal Intestine Small	intestine
9	chr5:74261600-74268400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr5:74261800-74262200	Enhancers	Small Intestine	intestine
11	chr5:74261800-74262400	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr5:74261800-74262400	Weak transcription	HepG2	liver
13	chr5:74261800-74267600	Enhancers	Duodenum Mucosa	Duodenum
14	chr5:74261800-74290400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr5:74262000-74263000	Enhancers	Rectal Mucosa Donor 29	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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