Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs4487475	0.97[EUR][1000 genomes]
rs4504370	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4551046	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4593249	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56778680	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57127117	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs59346405	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59384623	0.97[EUR][1000 genomes]
rs6869217	0.88[EUR][1000 genomes]
rs73110977	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73110980	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73110999	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73122553	0.93[AFR][1000 genomes]
rs73122556	0.92[AFR][1000 genomes]
rs73122560	0.92[AFR][1000 genomes]
rs73122563	0.92[AFR][1000 genomes]
rs73122599	0.80[AFR][1000 genomes]
rs73765654	0.99[EUR][1000 genomes]
rs7721887	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7731533	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830352	chr5:74189495-74337944	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv969994	chr5:74314591-74330479	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74303600-74316000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:74313600-74318200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:74313600-74341800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:74314600-74324800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:74314800-74315800	Weak transcription	Pancreas	Pancrea
6	chr5:74315200-74315400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:74315200-74315400	Enhancers	Fetal Intestine Large	intestine
8	chr5:74315200-74320400	Enhancers	Stomach Mucosa	stomach
9	chr5:74315200-74332800	Weak transcription	NHDF-Ad	bronchial

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