Variant report

Variant	rs7709353
Chromosome Location	chr5:112489531-112489532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112482887..112485655-chr5:112487737..112490349,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs6866411	1.00[ASN][1000 genomes]
rs6866874	1.00[ASN][1000 genomes]
rs6871346	1.00[ASN][1000 genomes]
rs6871578	1.00[ASN][1000 genomes]
rs7711281	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112467400-112493200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr5:112470200-112491000	Weak transcription	Fetal Kidney	kidney
3	chr5:112477400-112500600	Weak transcription	Fetal Stomach	stomach
4	chr5:112478000-112497000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:112479200-112490000	Weak transcription	Aorta	Aorta
6	chr5:112479400-112489600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr5:112481400-112496000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:112482600-112491400	Weak transcription	Adipose Nuclei	Adipose
9	chr5:112483000-112496800	Weak transcription	HMEC	breast
10	chr5:112483200-112495800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:112483400-112490000	Weak transcription	Left Ventricle	heart
12	chr5:112483400-112491800	Weak transcription	NHEK	skin
13	chr5:112483400-112494600	Weak transcription	Psoas Muscle	Psoas
14	chr5:112484200-112491800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:112484200-112495600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr5:112485400-112490400	Enhancers	Ovary	ovary
17	chr5:112485800-112492200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr5:112485800-112495200	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr5:112486800-112494600	Weak transcription	Lung	lung
20	chr5:112486800-112500400	Weak transcription	Gastric	stomach
21	chr5:112487200-112491200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr5:112487200-112498200	Weak transcription	Esophagus	oesophagus
23	chr5:112487600-112489600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr5:112488200-112491600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr5:112488200-112492800	Weak transcription	Right Atrium	heart
26	chr5:112488400-112489800	Weak transcription	Right Ventricle	heart
27	chr5:112488800-112490200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr5:112488800-112490800	Enhancers	NHDF-Ad	bronchial
29	chr5:112489000-112490000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr5:112489000-112492200	Weak transcription	Fetal Heart	heart
31	chr5:112489200-112489800	Enhancers	NHLF	lung
32	chr5:112489200-112490400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr5:112489200-112490400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr5:112489200-112500000	Weak transcription	Liver	Liver
35	chr5:112489400-112490200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr5:112489400-112490200	Enhancers	Spleen	Spleen
37	chr5:112489400-112490400	Weak transcription	Fetal Muscle Leg	muscle

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