Variant report

Variant	rs7711281
Chromosome Location	chr5:112507587-112507588
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10519340	1.00[GIH][hapmap]
rs6866411	1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs6866874	1.00[ASN][1000 genomes]
rs6871346	1.00[ASN][1000 genomes]
rs6871578	1.00[ASN][1000 genomes]
rs7709353	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112500800-112513800	Weak transcription	Lung	lung
2	chr5:112500800-112518400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:112503000-112513600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr5:112503200-112514000	Weak transcription	Fetal Stomach	stomach
5	chr5:112503600-112510800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr5:112503800-112514800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:112504200-112507600	Enhancers	Left Ventricle	heart
8	chr5:112504400-112507800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr5:112504400-112507800	Enhancers	Right Ventricle	heart
10	chr5:112504400-112512600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr5:112504800-112525600	Weak transcription	Esophagus	oesophagus
12	chr5:112505400-112512000	Weak transcription	Right Atrium	heart
13	chr5:112505800-112521400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:112506000-112512000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:112506200-112512000	Weak transcription	Liver	Liver
16	chr5:112506200-112512000	Weak transcription	NHEK	skin
17	chr5:112506200-112518200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr5:112506400-112521600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr5:112506600-112507800	Enhancers	Ovary	ovary
20	chr5:112506800-112508600	Enhancers	Fetal Heart	heart
21	chr5:112506800-112512000	Weak transcription	Adipose Nuclei	Adipose
22	chr5:112507000-112508000	Weak transcription	Brain Substantia Nigra	brain
23	chr5:112507000-112508400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr5:112507000-112511000	Weak transcription	Fetal Lung	lung
25	chr5:112507000-112511600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr5:112507000-112526000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr5:112507400-112512200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr5:112507400-112512200	Weak transcription	Psoas Muscle	Psoas

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