Variant report

Variant	rs7709886
Chromosome Location	chr5:79251361-79251362
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:79243051..79245888-chr5:79249775..79252734,2	K562	blood:
2	chr5:79233060..79235575-chr5:79249554..79252283,4	MCF-7	breast:
3	chr5:79249284..79251451-chr5:79270809..79273026,3	MCF-7	breast:
4	chr5:79249151..79251519-chr5:79253481..79257590,3	K562	blood:
5	chr5:79249486..79252419-chr5:79253972..79256405,2	MCF-7	breast:
6	chr5:79250469..79253672-chr5:79285038..79288543,6	MCF-7	breast:
7	chr5:79251016..79252738-chr5:79254951..79256533,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177034	Chromatin interaction
ENSG00000113296	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1000404	1.00[JPT][hapmap]
rs10491460	1.00[JPT][hapmap]
rs17470913	1.00[JPT][hapmap]
rs56228882	0.89[ASN][1000 genomes]
rs71635001	0.82[ASN][1000 genomes]
rs72772256	0.82[ASN][1000 genomes]
rs73770678	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021113	chr5:79034662-79289828	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1822393	chr5:79195538-79260489	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79250400-79252600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr5:79250400-79252600	Enhancers	NHDF-Ad	bronchial
3	chr5:79250600-79252600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr5:79250600-79252600	Enhancers	Fetal Muscle Leg	muscle
5	chr5:79250800-79251400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr5:79250800-79252000	Enhancers	Fetal Stomach	stomach
7	chr5:79250800-79252400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr5:79250800-79252600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:79250800-79252600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr5:79250800-79252600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr5:79250800-79252600	Enhancers	HMEC	breast
12	chr5:79250800-79252800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:79250800-79253400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:79250800-79253600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr5:79251000-79251600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:79251000-79251600	Enhancers	Ovary	ovary
17	chr5:79251000-79252000	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr5:79251000-79252000	Enhancers	NHEK	skin
19	chr5:79251000-79252000	Weak transcription	Osteobl	bone
20	chr5:79251000-79252400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr5:79251000-79252400	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr5:79251000-79254000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr5:79251200-79251600	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr5:79251200-79251600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr5:79251200-79251600	Weak transcription	HSMMtube	muscle
26	chr5:79251200-79252200	Weak transcription	Esophagus	oesophagus
27	chr5:79251200-79252600	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr5:79251200-79252600	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr5:79251200-79252800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr5:79251200-79252800	Enhancers	HSMM	muscle

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