Variant report

Variant	rs17470913
Chromosome Location	chr5:79094019-79094020
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:79091355..79094152-chr5:79124424..79126859,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1000404	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10491460	0.88[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16877221	1.00[ASN][1000 genomes]
rs16877234	1.00[ASN][1000 genomes]
rs17405970	1.00[ASN][1000 genomes]
rs34426200	1.00[ASN][1000 genomes]
rs34892951	1.00[ASN][1000 genomes]
rs35278462	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62363716	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71634994	1.00[ASN][1000 genomes]
rs7709886	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021113	chr5:79034662-79289828	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79081000-79096600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr5:79081000-79097000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:79081000-79098800	Weak transcription	Adipose Nuclei	Adipose
4	chr5:79082200-79095200	Weak transcription	Psoas Muscle	Psoas
5	chr5:79084800-79107400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:79085000-79102200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr5:79087000-79097400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr5:79087000-79099000	Weak transcription	Fetal Lung	lung
9	chr5:79087800-79094400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr5:79088000-79095200	Weak transcription	Pancreas	Pancrea
11	chr5:79089200-79095200	Weak transcription	Liver	Liver
12	chr5:79089600-79097400	Weak transcription	Aorta	Aorta
13	chr5:79089800-79094400	Weak transcription	HSMMtube	muscle
14	chr5:79091000-79100400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr5:79091800-79094800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr5:79091800-79096400	Weak transcription	Placenta	Placenta
17	chr5:79091800-79096800	Weak transcription	Colon Smooth Muscle	Colon
18	chr5:79092000-79095200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr5:79092000-79096000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr5:79092000-79096800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr5:79092000-79099000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr5:79092000-79099000	Weak transcription	Right Atrium	heart
23	chr5:79092000-79101800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr5:79092000-79102200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr5:79092000-79102600	Weak transcription	Fetal Stomach	stomach
26	chr5:79092000-79103200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr5:79092200-79096800	Weak transcription	K562	blood
28	chr5:79092200-79097200	Weak transcription	Spleen	Spleen
29	chr5:79092600-79097200	Weak transcription	Right Ventricle	heart
30	chr5:79093600-79094200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr5:79093600-79095200	Enhancers	Ovary	ovary
32	chr5:79093600-79097200	Strong transcription	Left Ventricle	heart
33	chr5:79093600-79099200	Genic enhancers	Skeletal Muscle Male	skeletal muscle
34	chr5:79093600-79100600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
35	chr5:79093800-79094600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr5:79094000-79094200	Enhancers	Fetal Heart	heart
37	chr5:79094000-79095400	Genic enhancers	Fetal Muscle Leg	muscle
38	chr5:79094000-79097000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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