Variant report

Variant	rs35278462
Chromosome Location	chr5:79091131-79091132
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:79089220..79091954-chr5:79096513..79098463,2	K562	blood:
2	chr5:79090454..79093125-chr5:79096513..79099079,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1000404	1.00[ASN][1000 genomes]
rs10491460	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16877221	1.00[ASN][1000 genomes]
rs16877234	1.00[ASN][1000 genomes]
rs17405970	1.00[ASN][1000 genomes]
rs17470913	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34426200	1.00[ASN][1000 genomes]
rs34892951	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62363716	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71634994	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021113	chr5:79034662-79289828	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79080800-79091200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:79080800-79091600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr5:79081000-79096600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr5:79081000-79097000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr5:79081000-79098800	Weak transcription	Adipose Nuclei	Adipose
6	chr5:79082200-79091200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:79082200-79091400	Weak transcription	Right Atrium	heart
8	chr5:79082200-79095200	Weak transcription	Psoas Muscle	Psoas
9	chr5:79084800-79091200	Strong transcription	Ovary	ovary
10	chr5:79084800-79091400	Strong transcription	Fetal Muscle Leg	muscle
11	chr5:79084800-79092000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
12	chr5:79084800-79092000	Genic enhancers	Skeletal Muscle Female	skeletal muscle
13	chr5:79084800-79107400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr5:79085000-79102200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr5:79086400-79091400	Weak transcription	Colon Smooth Muscle	Colon
16	chr5:79086400-79092000	Strong transcription	Fetal Stomach	stomach
17	chr5:79086800-79091600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr5:79087000-79097400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr5:79087000-79099000	Weak transcription	Fetal Lung	lung
20	chr5:79087800-79094400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr5:79088000-79091600	Genic enhancers	Fetal Heart	heart
22	chr5:79088000-79095200	Weak transcription	Pancreas	Pancrea
23	chr5:79088600-79091400	Weak transcription	Brain Anterior Caudate	brain
24	chr5:79089200-79095200	Weak transcription	Liver	Liver
25	chr5:79089400-79091400	Strong transcription	Fetal Muscle Trunk	muscle
26	chr5:79089400-79091800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr5:79089600-79097400	Weak transcription	Aorta	Aorta
28	chr5:79089800-79091400	Strong transcription	Right Ventricle	heart
29	chr5:79089800-79094400	Weak transcription	HSMMtube	muscle
30	chr5:79090000-79091400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr5:79090000-79091400	Strong transcription	Left Ventricle	heart
32	chr5:79090000-79093600	Weak transcription	Fetal Kidney	kidney
33	chr5:79090200-79091400	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr5:79090200-79091600	Enhancers	K562	blood
35	chr5:79090400-79091400	Weak transcription	Placenta	Placenta
36	chr5:79091000-79091400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr5:79091000-79100400	Weak transcription	Stomach Smooth Muscle	stomach

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