Variant report

Variant	rs16877221
Chromosome Location	chr5:79102932-79102933
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:79100149..79103061-chr5:79103654..79106343,2	MCF-7	breast:
2	chr5:79096458..79100446-chr5:79100447..79105035,6	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1000404	0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10491460	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16877234	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17405970	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17470913	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs34426200	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34892951	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35278462	1.00[ASN][1000 genomes]
rs62363716	1.00[ASN][1000 genomes]
rs6897751	0.81[EUR][1000 genomes]
rs71634994	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7709886	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021113	chr5:79034662-79289828	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79084800-79107400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:79092000-79103200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:79097200-79105200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:79097800-79105600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:79099400-79111000	Weak transcription	Right Atrium	heart
6	chr5:79101800-79103200	Enhancers	Fetal Heart	heart
7	chr5:79101800-79111000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr5:79102000-79104000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:79102200-79103200	Enhancers	Brain Cingulate Gyrus	brain
10	chr5:79102200-79103200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr5:79102200-79103600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr5:79102200-79103600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr5:79102200-79103600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr5:79102200-79103600	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr5:79102200-79103600	Enhancers	Left Ventricle	heart
16	chr5:79102400-79103000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr5:79102400-79103000	Enhancers	Brain Angular Gyrus	brain
18	chr5:79102400-79103200	Enhancers	Brain Anterior Caudate	brain
19	chr5:79102400-79103200	Flanking Active TSS	Brain Hippocampus Middle	brain
20	chr5:79102400-79103200	Enhancers	Dnd41	blood
21	chr5:79102400-79103200	Enhancers	K562	blood
22	chr5:79102400-79103600	Enhancers	Brain Substantia Nigra	brain
23	chr5:79102400-79107200	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr5:79102600-79103000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr5:79102600-79103000	Enhancers	Fetal Thymus	thymus
26	chr5:79102600-79103200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr5:79102600-79107000	Weak transcription	Right Ventricle	heart
28	chr5:79102800-79103000	Enhancers	Ovary	ovary
29	chr5:79102800-79104200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
30	chr5:79102800-79104400	Enhancers	Psoas Muscle	Psoas
31	chr5:79102800-79106200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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