Variant report

Variant	rs34426200
Chromosome Location	chr5:79109112-79109113
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1000404	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10491460	1.00[ASN][1000 genomes]
rs16877221	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16877234	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17405970	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17470913	1.00[ASN][1000 genomes]
rs34892951	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35278462	1.00[ASN][1000 genomes]
rs62363716	1.00[ASN][1000 genomes]
rs6897751	0.84[EUR][1000 genomes]
rs71634994	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021113	chr5:79034662-79289828	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79099400-79111000	Weak transcription	Right Atrium	heart
2	chr5:79101800-79111000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:79106200-79126200	Weak transcription	Psoas Muscle	Psoas
4	chr5:79107200-79111400	Weak transcription	Left Ventricle	heart
5	chr5:79107400-79125000	Weak transcription	Right Ventricle	heart
6	chr5:79107600-79109200	Enhancers	Fetal Heart	heart
7	chr5:79107600-79109200	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr5:79108200-79109200	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr5:79108800-79111600	Weak transcription	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links