Variant report

Variant	rs16877234
Chromosome Location	chr5:79111804-79111805
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1000404	1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10491460	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16877221	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17405970	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17470913	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs34426200	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34892951	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35278462	1.00[ASN][1000 genomes]
rs62363716	1.00[ASN][1000 genomes]
rs6897751	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71634994	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7709886	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021113	chr5:79034662-79289828	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79106200-79126200	Weak transcription	Psoas Muscle	Psoas
2	chr5:79107400-79125000	Weak transcription	Right Ventricle	heart
3	chr5:79109200-79123200	Weak transcription	Fetal Heart	heart
4	chr5:79111000-79112600	Strong transcription	Skeletal Muscle Male	skeletal muscle
5	chr5:79111000-79112800	Strong transcription	Skeletal Muscle Female	skeletal muscle
6	chr5:79111400-79112000	Strong transcription	Left Ventricle	heart
7	chr5:79111600-79112600	Enhancers	K562	blood
8	chr5:79111800-79116600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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