The 2.0 version of rSNPBase

Variant report

Variant rs7709992
Chromosome Location chr5:79446811-79446812
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:121 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:79432400-79449000 Weak transcription Fetal Brain Female brain
2 chr5:79433600-79476600 Weak transcription Small Intestine intestine
3 chr5:79435200-79447600 Strong transcription Liver Liver
4 chr5:79435800-79453600 Strong transcription Fetal Intestine Small intestine
5 chr5:79436600-79447400 Weak transcription Stomach Mucosa stomach
6 chr5:79436600-79448200 Genic enhancers Primary T helper cells PMA-I stimulated --
7 chr5:79437000-79448200 Genic enhancers Primary T helper naive cells fromperipheralblood blood
8 chr5:79437000-79448200 Strong transcription Sigmoid Colon Sigmoid Colon
9 chr5:79437200-79448000 Strong transcription Dnd41 blood
10 chr5:79437400-79448000 Strong transcription Rectal Mucosa Donor 31 rectum
11 chr5:79437600-79448200 Strong transcription Rectal Mucosa Donor 29 rectum
12 chr5:79437600-79449600 Weak transcription Right Atrium heart
13 chr5:79437600-79449600 Weak transcription NHLF lung
14 chr5:79437600-79456200 Weak transcription HSMM muscle
15 chr5:79437600-79464000 Weak transcription Spleen Spleen
16 chr5:79437800-79454800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
17 chr5:79437800-79471400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
18 chr5:79438000-79447000 Strong transcription Primary T regulatory cells fromperipheralblood blood
19 chr5:79438000-79455600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
20 chr5:79438400-79447400 Strong transcription HepG2 liver
21 chr5:79438400-79448800 Strong transcription Duodenum Mucosa Duodenum
22 chr5:79438400-79449600 Strong transcription Placenta Placenta
23 chr5:79438600-79448200 Strong transcription Fetal Intestine Large intestine
24 chr5:79438600-79482600 Weak transcription Psoas Muscle Psoas
25 chr5:79439000-79448000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
26 chr5:79439000-79449400 Weak transcription HMEC breast
27 chr5:79439200-79455000 Weak transcription ES-WA7 Cell Line embryonic stem cell
28 chr5:79439200-79456200 Strong transcription Fetal Stomach stomach
29 chr5:79439800-79447400 Weak transcription Primary B cells from peripheral blood blood
30 chr5:79439800-79455000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
31 chr5:79439800-79458600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
32 chr5:79440200-79468200 Weak transcription NHDF-Ad bronchial
33 chr5:79440400-79448200 Strong transcription Breast Myoepithelial Primary Cells Breast
34 chr5:79440800-79449600 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
35 chr5:79440800-79449600 Weak transcription Colon Smooth Muscle Colon
36 chr5:79441000-79449000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
37 chr5:79441400-79456400 Strong transcription Primary hematopoietic stem cells short term culture blood
38 chr5:79441600-79450000 Genic enhancers Fetal Thymus thymus
39 chr5:79441800-79448200 Genic enhancers Primary T killer naive cells fromperipheralblood blood
40 chr5:79441800-79448200 Strong transcription Esophagus oesophagus
41 chr5:79441800-79450800 Weak transcription Pancreatic Islets Pancreatic Islet
42 chr5:79442000-79447200 Enhancers Primary T killer memory cells from peripheral blood blood
43 chr5:79442000-79448000 Genic enhancers Primary T cells fromperipheralblood blood
44 chr5:79442000-79448600 Genic enhancers Primary T cells from cord blood blood
45 chr5:79442000-79450600 Genic enhancers Primary T helper cells fromperipheralblood blood
46 chr5:79442000-79453200 Weak transcription Duodenum Smooth Muscle Duodenum
47 chr5:79442000-79487600 Weak transcription NH-A brain
48 chr5:79442200-79447600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
49 chr5:79442600-79449600 Weak transcription Fetal Brain Male brain
50 chr5:79442800-79447800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015