Variant report

Variant	rs6898006
Chromosome Location	chr5:79452468-79452469
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:79451712..79454620-chr5:79550905..79553202,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164300	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs57050931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73125989	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7709992	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79433600-79476600	Weak transcription	Small Intestine	intestine
2	chr5:79435800-79453600	Strong transcription	Fetal Intestine Small	intestine
3	chr5:79437600-79456200	Weak transcription	HSMM	muscle
4	chr5:79437600-79464000	Weak transcription	Spleen	Spleen
5	chr5:79437800-79454800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:79437800-79471400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:79438000-79455600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:79438600-79482600	Weak transcription	Psoas Muscle	Psoas
9	chr5:79439200-79455000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr5:79439200-79456200	Strong transcription	Fetal Stomach	stomach
11	chr5:79439800-79455000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:79439800-79458600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr5:79440200-79468200	Weak transcription	NHDF-Ad	bronchial
14	chr5:79441400-79456400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr5:79442000-79453200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr5:79442000-79487600	Weak transcription	NH-A	brain
17	chr5:79444000-79476800	Weak transcription	Colonic Mucosa	Colon
18	chr5:79444600-79465600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr5:79445000-79456000	Strong transcription	Thymus	Thymus
20	chr5:79445600-79454600	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr5:79445800-79454200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr5:79445800-79464600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr5:79446200-79453200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr5:79446200-79464600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr5:79446200-79465200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr5:79447000-79453200	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr5:79447800-79453400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr5:79447800-79453600	Weak transcription	Primary hematopoietic stem cells	blood
29	chr5:79447800-79454400	Weak transcription	Rectal Smooth Muscle	rectum
30	chr5:79447800-79458200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr5:79448000-79464600	Weak transcription	Gastric	stomach
32	chr5:79448200-79453200	Weak transcription	Lung	lung
33	chr5:79448200-79453600	Weak transcription	NHEK	skin
34	chr5:79448200-79466400	Weak transcription	Aorta	Aorta
35	chr5:79448400-79453200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr5:79448400-79464800	Weak transcription	Primary B cells from peripheral blood	blood
37	chr5:79448800-79453200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr5:79449400-79452800	Enhancers	HepG2	liver
39	chr5:79449400-79455800	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr5:79449400-79464200	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr5:79449600-79454200	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr5:79449800-79453200	Weak transcription	Fetal Brain Female	brain
43	chr5:79449800-79456200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr5:79449800-79456200	Strong transcription	Fetal Intestine Large	intestine
45	chr5:79449800-79471400	Strong transcription	Dnd41	blood
46	chr5:79450000-79453000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr5:79450000-79453200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr5:79450000-79453400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr5:79450000-79453400	Weak transcription	Brain Angular Gyrus	brain
50	chr5:79450000-79453800	Weak transcription	Fetal Heart	heart

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