Variant report

Variant	rs73125989
Chromosome Location	chr5:79457352-79457353
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11958490	1.00[EUR][1000 genomes]
rs17883722	1.00[EUR][1000 genomes]
rs57050931	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs58066027	1.00[EUR][1000 genomes]
rs58965928	1.00[EUR][1000 genomes]
rs60225067	1.00[EUR][1000 genomes]
rs6898006	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs73125935	1.00[EUR][1000 genomes]
rs73125936	1.00[EUR][1000 genomes]
rs73125953	1.00[EUR][1000 genomes]
rs73125957	1.00[EUR][1000 genomes]
rs73772233	1.00[EUR][1000 genomes]
rs73772249	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79433600-79476600	Weak transcription	Small Intestine	intestine
2	chr5:79437600-79464000	Weak transcription	Spleen	Spleen
3	chr5:79437800-79471400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:79438600-79482600	Weak transcription	Psoas Muscle	Psoas
5	chr5:79439800-79458600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr5:79440200-79468200	Weak transcription	NHDF-Ad	bronchial
7	chr5:79442000-79487600	Weak transcription	NH-A	brain
8	chr5:79444000-79476800	Weak transcription	Colonic Mucosa	Colon
9	chr5:79444600-79465600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr5:79445800-79464600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr5:79446200-79464600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr5:79446200-79465200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:79447800-79458200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr5:79448000-79464600	Weak transcription	Gastric	stomach
15	chr5:79448200-79466400	Weak transcription	Aorta	Aorta
16	chr5:79448400-79464800	Weak transcription	Primary B cells from peripheral blood	blood
17	chr5:79449400-79464200	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr5:79449800-79471400	Strong transcription	Dnd41	blood
19	chr5:79450000-79461000	Strong transcription	Primary T cells from cord blood	blood
20	chr5:79450000-79461000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr5:79450000-79461200	Weak transcription	Stomach Mucosa	stomach
22	chr5:79450000-79461400	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr5:79450000-79461600	Strong transcription	Liver	Liver
24	chr5:79450000-79461800	Weak transcription	Fetal Brain Male	brain
25	chr5:79450000-79464200	Weak transcription	Colon Smooth Muscle	Colon
26	chr5:79450000-79464600	Weak transcription	Right Ventricle	heart
27	chr5:79450000-79464800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr5:79450000-79464800	Weak transcription	Stomach Smooth Muscle	stomach
29	chr5:79450000-79466200	Strong transcription	Fetal Thymus	thymus
30	chr5:79450000-79469800	Weak transcription	HSMMtube	muscle
31	chr5:79450000-79477200	Weak transcription	HMEC	breast
32	chr5:79450000-79477600	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr5:79450400-79471200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr5:79450400-79472800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr5:79450600-79460800	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr5:79450800-79473800	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr5:79451400-79462400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr5:79451600-79460000	Strong transcription	Duodenum Mucosa	Duodenum
39	chr5:79452000-79464400	Strong transcription	Placenta	Placenta
40	chr5:79452400-79458200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr5:79452400-79468800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr5:79452400-79470600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr5:79453000-79460800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr5:79453200-79457800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr5:79453200-79458000	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr5:79454000-79457600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr5:79454000-79460000	Strong transcription	Fetal Lung	lung
48	chr5:79454600-79458000	Genic enhancers	HUES6 Cell Line	embryonic stem cell
49	chr5:79454600-79458400	Genic enhancers	HUES64 Cell Line	embryonic stem cell
50	chr5:79454600-79459400	Strong transcription	Rectal Mucosa Donor 31	rectum

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