Variant report

Variant	rs60225067
Chromosome Location	chr5:79424413-79424414
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:79423046..79425756-chr5:79550269..79553191,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164300	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11958490	1.00[EUR][1000 genomes]
rs17883722	1.00[EUR][1000 genomes]
rs58066027	1.00[EUR][1000 genomes]
rs58965928	1.00[EUR][1000 genomes]
rs73125935	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73125936	1.00[EUR][1000 genomes]
rs73125953	1.00[EUR][1000 genomes]
rs73125957	1.00[EUR][1000 genomes]
rs73125989	1.00[EUR][1000 genomes]
rs73772233	1.00[EUR][1000 genomes]
rs73772249	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79410000-79430800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:79417000-79437000	Weak transcription	Pancreas	Pancrea
3	chr5:79417400-79425400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr5:79417400-79430400	Weak transcription	Dnd41	blood
5	chr5:79419600-79435200	Weak transcription	Liver	Liver
6	chr5:79420800-79437000	Weak transcription	Lung	lung
7	chr5:79421000-79437000	Weak transcription	Fetal Brain Male	brain
8	chr5:79421200-79435400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr5:79421200-79436800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr5:79421400-79424600	Enhancers	NHDF-Ad	bronchial
11	chr5:79421600-79428600	Weak transcription	Thymus	Thymus
12	chr5:79421600-79435800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr5:79421600-79438800	Weak transcription	Esophagus	oesophagus
14	chr5:79421800-79427000	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr5:79421800-79430800	Weak transcription	Spleen	Spleen
16	chr5:79422200-79427400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr5:79422200-79429600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr5:79422400-79427600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr5:79423000-79427200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr5:79423200-79426400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr5:79423200-79427000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr5:79423200-79427400	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr5:79423200-79427600	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr5:79423400-79424600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr5:79423400-79427400	Weak transcription	Primary T cells from cord blood	blood
26	chr5:79423400-79430600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr5:79423400-79437000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr5:79423800-79424600	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr5:79423800-79424800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr5:79423800-79425000	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr5:79423800-79425000	Enhancers	HSMMtube	muscle
32	chr5:79424000-79424600	Enhancers	H1 Cell Line	embryonic stem cell
33	chr5:79424000-79424600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr5:79424000-79424600	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr5:79424000-79424600	Enhancers	Fetal Lung	lung
36	chr5:79424000-79424800	Enhancers	Fetal Intestine Large	intestine
37	chr5:79424000-79425000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr5:79424000-79425000	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr5:79424000-79425000	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr5:79424000-79425000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr5:79424000-79425200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr5:79424000-79425200	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr5:79424000-79425200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr5:79424000-79425200	Enhancers	Fetal Heart	heart
45	chr5:79424000-79425200	Enhancers	Placenta	Placenta
46	chr5:79424000-79425200	Enhancers	Fetal Stomach	stomach
47	chr5:79424000-79425400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr5:79424000-79425400	Enhancers	Fetal Kidney	kidney
49	chr5:79424000-79425400	Enhancers	Fetal Muscle Leg	muscle
50	chr5:79424000-79425400	Enhancers	HepG2	liver

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