Variant report

Variant	rs58066027
Chromosome Location	chr5:79504831-79504832
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:79503625..79505476-chr5:79514776..79516793,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11958490	1.00[EUR][1000 genomes]
rs17883722	1.00[EUR][1000 genomes]
rs58831173	1.00[EUR][1000 genomes]
rs58901908	1.00[EUR][1000 genomes]
rs58965928	1.00[EUR][1000 genomes]
rs59107533	1.00[EUR][1000 genomes]
rs60225067	1.00[EUR][1000 genomes]
rs73125935	1.00[EUR][1000 genomes]
rs73125936	1.00[EUR][1000 genomes]
rs73125953	1.00[EUR][1000 genomes]
rs73125957	1.00[EUR][1000 genomes]
rs73125989	1.00[EUR][1000 genomes]
rs73772233	1.00[EUR][1000 genomes]
rs73772249	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79490800-79513800	Weak transcription	Fetal Kidney	kidney
2	chr5:79492200-79506200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:79495200-79507800	Weak transcription	Right Ventricle	heart
4	chr5:79497000-79506800	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr5:79497000-79508800	Enhancers	Brain Substantia Nigra	brain
6	chr5:79497200-79505400	Enhancers	Brain Angular Gyrus	brain
7	chr5:79497400-79515000	Weak transcription	Esophagus	oesophagus
8	chr5:79497800-79508400	Weak transcription	Primary B cells from peripheral blood	blood
9	chr5:79498600-79520800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:79498600-79521200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr5:79498800-79509800	Enhancers	Brain Hippocampus Middle	brain
12	chr5:79498800-79514000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr5:79499000-79506600	Weak transcription	Lung	lung
14	chr5:79499000-79507800	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr5:79499000-79509200	Weak transcription	Spleen	Spleen
16	chr5:79499000-79513200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr5:79499000-79517800	Weak transcription	Aorta	Aorta
18	chr5:79499400-79507000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr5:79499800-79505600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr5:79500000-79505600	Weak transcription	Fetal Stomach	stomach
21	chr5:79500000-79509200	Weak transcription	Fetal Muscle Leg	muscle
22	chr5:79500000-79509400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr5:79500000-79537600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr5:79500200-79506200	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr5:79500200-79512000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr5:79500400-79506800	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr5:79500400-79508200	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr5:79500400-79510400	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr5:79500600-79505200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr5:79501000-79505200	Weak transcription	Left Ventricle	heart
31	chr5:79501000-79506400	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr5:79501000-79506800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr5:79501000-79508000	Enhancers	Brain Anterior Caudate	brain
34	chr5:79501000-79509200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr5:79501000-79510600	Enhancers	Primary T cells fromperipheralblood	blood
36	chr5:79501000-79512000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr5:79501000-79513200	Weak transcription	Stomach Smooth Muscle	stomach
38	chr5:79501200-79506400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr5:79501200-79506600	Weak transcription	Gastric	stomach
40	chr5:79501200-79507800	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr5:79501200-79508400	Enhancers	Brain Cingulate Gyrus	brain
42	chr5:79501400-79506200	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr5:79501400-79506200	Enhancers	HepG2	liver
44	chr5:79501400-79507000	Weak transcription	Small Intestine	intestine
45	chr5:79501400-79507600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr5:79501400-79507600	Weak transcription	Colonic Mucosa	Colon
47	chr5:79501400-79507800	Weak transcription	Duodenum Mucosa	Duodenum
48	chr5:79501400-79509200	Weak transcription	Primary B cells from cord blood	blood
49	chr5:79501400-79509200	Weak transcription	Right Atrium	heart
50	chr5:79501400-79509400	Weak transcription	NHEK	skin

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