Variant report

Variant	rs7710737
Chromosome Location	chr5:57797851-57797852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr5:57797750-57798341	SK-N-SH	brain:	n/a	n/a
2	CTCF	chr5:57797832-57798298	MCF-7	breast:	n/a	n/a
3	CTCF	chr5:57797793-57798235	HCT-116	colon:	n/a	n/a
4	CEBPB	chr5:57797693-57797888	Hela-S3	cervix:	n/a	chr5:57797829-57797840
5	CTCF	chr5:57797734-57798334	SK-N-SH	brain:	n/a	n/a
6	CEBPB	chr5:57797811-57797906	HepG2	liver:	n/a	chr5:57797829-57797840
7	RAD21	chr5:57797850-57798215	H1-hESC	embryonic stem cell:	n/a	n/a
8	CTCF	chr5:57797820-57797970	NHDF-neo	bronchial:	n/a	n/a
9	CEBPB	chr5:57797683-57797950	IMR90	lung:	n/a	chr5:57797829-57797840
10	CTCF	chr5:57797799-57798251	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57797123..57798291-chr5:58108900..58109754,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271257	TF binding region

Extended variants
information (count: 54 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10037721	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10039062	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10052714	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10055153	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10056153	0.91[CEU][hapmap]
rs10057028	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10063214	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10064698	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10064918	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10069804	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10069810	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10070522	0.91[CEU][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10472063	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1159072	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11748206	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11748233	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12186775	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13178332	1.00[CEU][hapmap]
rs1389308	0.91[CEU][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1508908	0.91[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1508909	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1508921	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1559240	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1565729	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1858086	0.98[ASN][1000 genomes]
rs1858087	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2011644	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2029690	0.91[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2408929	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4700294	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4700295	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6450477	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6450479	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6872961	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6879314	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6886814	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6891070	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6892103	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6892457	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7704108	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7704785	0.91[CEU][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7708191	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7717166	1.00[ASN][1000 genomes]
rs7721390	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7721538	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7722318	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7726376	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9292162	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9292163	0.96[ASN][1000 genomes]
rs9292164	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9292167	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs963989	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs966269	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs966270	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7710737	GAPT	cis	Whole Blood	GTEx

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57787400-57799400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr5:57788800-57801600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr5:57791800-57798400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr5:57794600-57799200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr5:57796200-57803200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr5:57796400-57800600	Weak transcription	Fetal Lung	lung
7	chr5:57796400-57800600	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr5:57796400-57801400	Weak transcription	GM12878-XiMat	blood
9	chr5:57796600-57798800	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr5:57796800-57800800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr5:57797000-57800600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr5:57797000-57801400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr5:57797200-57798400	Weak transcription	Primary B cells from cord blood	blood
14	chr5:57797200-57801000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr5:57797800-57801800	Weak transcription	Primary T cells from cord blood	blood
16	chr5:57797800-57804200	Enhancers	Primary B cells from peripheral blood	blood

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