Variant report

Variant	rs10070522
Chromosome Location	chr5:57786110-57786111
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr5:57785960-57786110	GM12874	blood:	n/a	n/a
2	STAT3	chr5:57786044-57786244	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
GAPT	TF binding region

Extended variants
information (count: 57 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10037721	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10039062	0.89[EUR][1000 genomes]
rs10052714	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10055153	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10056153	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs10057028	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10063214	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10064698	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10064918	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10069804	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10069810	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10070704	0.83[ASN][1000 genomes]
rs10472063	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1159072	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11748206	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11748233	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12186775	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13166524	0.83[ASN][1000 genomes]
rs13178332	0.92[CEU][hapmap];0.93[GIH][hapmap];0.96[MEX][hapmap];0.88[TSI][hapmap]
rs1389308	1.00[CEU][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1508908	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1508909	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1508921	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1559240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1565729	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1858087	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2011644	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2029690	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2408929	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4551014	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs4700294	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4700295	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6450477	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6450479	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6450481	0.82[ASN][1000 genomes]
rs6862791	0.83[ASN][1000 genomes]
rs6872961	0.85[EUR][1000 genomes]
rs6879314	0.92[CEU][hapmap];0.95[GIH][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6886814	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6891070	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6892103	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6892457	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6894735	0.83[ASN][1000 genomes]
rs7704108	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7704785	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7708191	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7710737	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7721390	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7721538	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7722318	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7726376	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9292162	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9292164	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9292167	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs963989	0.92[CEU][hapmap];0.98[GIH][hapmap];0.96[MEX][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs966269	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs966270	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10070522	DEPDC1B	cis	cerebellum	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57785000-57787000	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr5:57785400-57786400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr5:57785400-57786400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr5:57785400-57787200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr5:57785400-57787200	Enhancers	Primary B cells from peripheral blood	blood
6	chr5:57785600-57786400	Enhancers	Primary hematopoietic stem cells	blood
7	chr5:57785800-57786200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:57785800-57786400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:57785800-57786400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr5:57785800-57786400	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr5:57785800-57786600	Enhancers	H9 Cell Line	embryonic stem cell
12	chr5:57785800-57786600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:57785800-57786600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
14	chr5:57785800-57786800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr5:57785800-57787200	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr5:57785800-57787200	Flanking Active TSS	Primary B cells from cord blood	blood
17	chr5:57785800-57787600	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr5:57785800-57787600	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr5:57785800-57787800	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr5:57786000-57786600	Enhancers	H1 Cell Line	embryonic stem cell
21	chr5:57786000-57786800	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr5:57786000-57786800	Enhancers	Brain Germinal Matrix	brain
23	chr5:57786000-57787200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr5:57786000-57787400	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr5:57786000-57787800	Enhancers	HUES48 Cell Line	embryonic stem cell

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