Variant report

Variant	rs4551014
Chromosome Location	chr5:57783901-57783902
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:55796962..55798586-chr5:57782622..57784143,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10035587	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10056043	1.00[ASN][1000 genomes]
rs10070522	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs10071540	1.00[ASN][1000 genomes]
rs10071783	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10074748	0.98[ASN][1000 genomes]
rs10472062	0.96[ASN][1000 genomes]
rs10472063	0.94[AFR][1000 genomes]
rs11745321	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11955212	0.92[ASN][1000 genomes]
rs12173136	0.98[ASN][1000 genomes]
rs12187683	0.92[ASN][1000 genomes]
rs1422230	0.82[CHB][hapmap]
rs1508908	0.87[YRI][hapmap]
rs1559240	0.95[AFR][1000 genomes]
rs1605742	0.87[CHB][hapmap]
rs17712820	0.87[CHB][hapmap]
rs2029690	0.95[AFR][1000 genomes]
rs2307117	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4700297	0.87[EUR][1000 genomes]
rs57211722	0.89[ASN][1000 genomes]
rs57367646	0.95[ASN][1000 genomes]
rs6865094	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6869174	1.00[ASN][1000 genomes]
rs6870990	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6890117	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6890154	0.98[ASN][1000 genomes]
rs6890362	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6890847	0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs6891534	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6895777	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6895889	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6896790	0.80[CHB][hapmap]
rs73094379	0.92[ASN][1000 genomes]
rs7712288	0.90[ASN][1000 genomes]
rs7723416	0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598246	chr5:57777623-57785273	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57773200-57785400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr5:57781200-57785000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr5:57782800-57785400	Weak transcription	Primary B cells from cord blood	blood
4	chr5:57782800-57785400	Weak transcription	Primary B cells from peripheral blood	blood
5	chr5:57783000-57785800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr5:57783200-57784800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr5:57783600-57784800	Weak transcription	Primary monocytes fromperipheralblood	blood

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