Variant report

Variant	rs6890847
Chromosome Location	chr5:57785273-57785274
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10035587	0.83[ASN][1000 genomes]
rs10056043	0.83[ASN][1000 genomes]
rs10071540	0.83[ASN][1000 genomes]
rs10071783	0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs10074748	0.80[ASN][1000 genomes]
rs11745321	0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs12173136	0.80[ASN][1000 genomes]
rs16888211	0.84[ASW][hapmap];0.82[MKK][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17228054	1.00[EUR][1000 genomes]
rs2307117	0.82[CHD][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs4551014	0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs6865094	0.82[CHD][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs6869174	0.83[ASN][1000 genomes]
rs6890117	0.83[ASN][1000 genomes]
rs6890154	0.85[ASN][1000 genomes]
rs6890362	0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs6891534	0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs6895777	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs6895889	0.82[CHD][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598246	chr5:57777623-57785273	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57773200-57785400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr5:57782800-57785400	Weak transcription	Primary B cells from cord blood	blood
3	chr5:57782800-57785400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr5:57783000-57785800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr5:57784800-57785800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr5:57784800-57786000	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr5:57785000-57785400	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr5:57785000-57787000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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