Variant report

Variant	rs10035587
Chromosome Location	chr5:57782499-57782500
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr5:57782095-57782544	HL-60	blood:	n/a	chr5:57782321-57782334

Variant related genes	Relation type
GAPT	TF binding region

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10056043	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10071540	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10071783	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10074748	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10472062	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11739694	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11741689	0.92[EUR][1000 genomes]
rs11742549	0.95[CEU][hapmap]
rs11745321	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11746501	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs11747268	0.97[EUR][1000 genomes]
rs11747708	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs11948189	0.93[EUR][1000 genomes]
rs11949753	0.93[EUR][1000 genomes]
rs11950095	0.93[EUR][1000 genomes]
rs11955212	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11958256	0.88[EUR][1000 genomes]
rs12173136	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12187683	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12188785	0.87[EUR][1000 genomes]
rs1605739	0.90[CEU][hapmap]
rs1605740	0.90[CEU][hapmap]
rs17712683	0.95[CEU][hapmap]
rs17712713	0.90[CEU][hapmap]
rs17773396	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2307117	0.92[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4551014	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs57211722	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57367646	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62366403	0.92[EUR][1000 genomes]
rs62366404	0.93[EUR][1000 genomes]
rs62366441	0.98[EUR][1000 genomes]
rs62366446	0.89[EUR][1000 genomes]
rs62366447	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62366448	0.89[EUR][1000 genomes]
rs62367805	0.84[EUR][1000 genomes]
rs6865094	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6869174	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6889999	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6890117	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6890154	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6890362	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6890847	0.83[ASN][1000 genomes]
rs6891534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6895777	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6895889	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73094379	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7712288	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7721366	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598246	chr5:57777623-57785273	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57773200-57785400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr5:57778200-57782800	Enhancers	Primary B cells from peripheral blood	blood
3	chr5:57779400-57783600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr5:57780400-57783000	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr5:57781000-57782800	Enhancers	Primary B cells from cord blood	blood
6	chr5:57781200-57785000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr5:57782400-57782800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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