Variant report

Variant	rs11747708
Chromosome Location	chr5:57787106-57787107
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr5:57787103-57787359	GM12891	blood:	n/a	chr5:57787284-57787297 chr5:57787203-57787210
2	SPI1	chr5:57787026-57787417	HL-60	blood:	n/a	chr5:57787284-57787297 chr5:57787203-57787210
3	SPI1	chr5:57786992-57787450	HL-60	blood:	n/a	chr5:57787284-57787297 chr5:57787203-57787210
4	MYC	chr5:57787022-57787535	NB4	blood:	n/a	n/a
5	MAX	chr5:57787082-57787569	NB4	blood:	n/a	n/a

Variant related genes	Relation type
GAPT	TF binding region

Extended variants
information (count: 68 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10035587	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs10056043	0.97[EUR][1000 genomes]
rs10071540	0.97[EUR][1000 genomes]
rs10071783	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs10074748	0.97[EUR][1000 genomes]
rs10472062	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11739694	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11741689	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11742549	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs11745321	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs11746501	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11747268	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11948189	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11949041	1.00[ASN][1000 genomes]
rs11949753	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11950095	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11955212	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11957466	1.00[ASN][1000 genomes]
rs11958256	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12173136	0.97[EUR][1000 genomes]
rs12187683	0.97[EUR][1000 genomes]
rs12188785	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12518781	1.00[ASN][1000 genomes]
rs13159762	1.00[ASN][1000 genomes]
rs13168504	1.00[ASN][1000 genomes]
rs13168895	1.00[ASN][1000 genomes]
rs13174477	1.00[ASN][1000 genomes]
rs13176857	1.00[CHB][hapmap]
rs13184050	0.85[ASN][1000 genomes]
rs15915	1.00[ASN][1000 genomes]
rs1605739	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1605740	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17709855	1.00[CHB][hapmap]
rs17712683	0.95[CEU][hapmap]
rs17712713	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap]
rs17773396	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4700297	1.00[ASN][1000 genomes]
rs57211722	0.85[EUR][1000 genomes]
rs57367646	0.95[EUR][1000 genomes]
rs57844100	0.92[ASN][1000 genomes]
rs59598546	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366360	1.00[ASN][1000 genomes]
rs62366396	1.00[ASN][1000 genomes]
rs62366397	1.00[ASN][1000 genomes]
rs62366400	1.00[ASN][1000 genomes]
rs62366401	1.00[ASN][1000 genomes]
rs62366402	1.00[ASN][1000 genomes]
rs62366403	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366404	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366441	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366446	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366447	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366448	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62367805	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6865094	1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs6869174	0.97[EUR][1000 genomes]
rs6870990	1.00[ASN][1000 genomes]
rs6889999	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6890117	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs6890154	0.97[EUR][1000 genomes]
rs6890362	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs6891534	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs6895777	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs6895889	1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs73094379	0.96[EUR][1000 genomes]
rs7712288	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7721366	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs963615	1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11747708	GAPT	cis	parietal	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57785400-57787200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr5:57785400-57787200	Enhancers	Primary B cells from peripheral blood	blood
3	chr5:57785800-57787200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr5:57785800-57787200	Flanking Active TSS	Primary B cells from cord blood	blood
5	chr5:57785800-57787600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr5:57785800-57787600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr5:57785800-57787800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr5:57786000-57787200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr5:57786000-57787400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr5:57786000-57787800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr5:57786200-57787200	Enhancers	Primary T cells from cord blood	blood
12	chr5:57786200-57787600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr5:57786200-57788200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:57786600-57787200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr5:57786800-57795800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr5:57787000-57787200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
17	chr5:57787000-57787400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr5:57787000-57787600	Active TSS	Primary hematopoietic stem cells	blood
19	chr5:57787000-57788000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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