Variant report

Variant	rs13176857
Chromosome Location	chr5:57724741-57724742
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57722619..57725574-chr5:57732992..57735814,2	MCF-7	breast:
2	chr5:57723185..57726129-chr5:57754540..57756471,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10513145	0.81[EUR][1000 genomes]
rs10805507	0.81[EUR][1000 genomes]
rs11739498	0.81[EUR][1000 genomes]
rs11740846	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11742549	1.00[CHB][hapmap]
rs11745514	0.82[EUR][1000 genomes]
rs11746501	1.00[CHB][hapmap]
rs11747708	1.00[CHB][hapmap]
rs11749794	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11953112	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs11957466	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11958495	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11959784	0.81[AMR][1000 genomes]
rs12522572	0.81[EUR][1000 genomes]
rs13159762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13166103	0.82[AMR][1000 genomes]
rs13168895	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13174477	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13187020	0.82[EUR][1000 genomes]
rs13188849	1.00[ASN][1000 genomes]
rs1396503	0.81[EUR][1000 genomes]
rs15915	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1605739	1.00[CHB][hapmap]
rs1605740	1.00[CHB][hapmap]
rs17709263	0.81[EUR][1000 genomes]
rs17709855	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17712713	1.00[CHB][hapmap]
rs17766068	0.82[EUR][1000 genomes]
rs17766240	0.83[EUR][1000 genomes]
rs17773396	1.00[CHB][hapmap]
rs34415498	0.81[EUR][1000 genomes]
rs35345509	0.80[EUR][1000 genomes]
rs35917227	0.80[EUR][1000 genomes]
rs3914030	0.81[EUR][1000 genomes]
rs4699926	0.89[ASN][1000 genomes]
rs4700282	0.81[EUR][1000 genomes]
rs4700283	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs62366396	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62366397	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62366400	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62366401	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62366402	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62368176	0.81[EUR][1000 genomes]
rs62368203	0.80[EUR][1000 genomes]
rs62368206	0.81[EUR][1000 genomes]
rs6882289	1.00[ASN][1000 genomes]
rs719427	0.82[EUR][1000 genomes]
rs719429	0.82[EUR][1000 genomes]
rs726842	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7701530	1.00[ASN][1000 genomes]
rs963615	0.92[EUR][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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