Variant report

Variant	rs6882289
Chromosome Location	chr5:57740028-57740029
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57739641..57742111-chr5:57749437..57750937,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1035484	0.88[AFR][1000 genomes]
rs1035485	0.88[AFR][1000 genomes]
rs1042994	0.87[AFR][1000 genomes]
rs11546180	0.86[AFR][1000 genomes]
rs11958495	1.00[ASN][1000 genomes]
rs12513877	0.88[AFR][1000 genomes]
rs12518781	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12522386	0.88[AFR][1000 genomes]
rs13168504	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13176857	1.00[ASN][1000 genomes]
rs13184050	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13188849	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17709855	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17710502	0.87[AFR][1000 genomes]
rs17710615	0.88[AFR][1000 genomes]
rs17767072	0.88[AFR][1000 genomes]
rs2201293	0.88[AFR][1000 genomes]
rs2220785	0.88[AFR][1000 genomes]
rs2408946	0.88[AFR][1000 genomes]
rs33921924	0.88[AFR][1000 genomes]
rs34150563	0.88[AFR][1000 genomes]
rs34974449	0.88[AFR][1000 genomes]
rs4699926	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4700289	0.88[AFR][1000 genomes]
rs55827457	0.84[AFR][1000 genomes]
rs56286824	0.88[AFR][1000 genomes]
rs56318521	0.88[AFR][1000 genomes]
rs59135347	0.88[AFR][1000 genomes]
rs62366360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6879330	0.84[AFR][1000 genomes]
rs726842	1.00[ASN][1000 genomes]
rs7701530	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7708381	0.86[AFR][1000 genomes]
rs7736949	0.88[AFR][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57735200-57751400	Weak transcription	Psoas Muscle	Psoas
2	chr5:57737000-57747400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr5:57737400-57740800	Weak transcription	A549	lung
4	chr5:57737400-57747000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr5:57737800-57748600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:57737800-57749000	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links