Variant report

Variant	rs13168504
Chromosome Location	chr5:57747345-57747346
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:57480978..57482713-chr5:57745700..57747578,2	MCF-7	breast:
2	chr5:57375298..57377194-chr5:57746717..57748968,2	MCF-7	breast:
3	chr5:57480309..57485854-chr5:57746705..57749645,6	MCF-7	breast:
4	chr5:56594281..56596784-chr5:57747106..57749163,2	MCF-7	breast:
5	chr5:57528101..57530824-chr5:57745599..57747448,2	MCF-7	breast:
6	chr5:57541847..57544684-chr5:57747160..57748861,2	MCF-7	breast:
7	chr5:57534237..57536303-chr5:57746058..57748624,2	MCF-7	breast:
8	chr5:57370978..57374867-chr5:57746378..57750088,5	MCF-7	breast:
9	chr5:57554637..57557710-chr5:57746924..57749357,4	MCF-7	breast:
10	chr5:57714527..57717379-chr5:57746221..57748788,2	MCF-7	breast:
11	chr5:57206110..57208433-chr5:57745536..57747516,2	MCF-7	breast:

No data

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1035484	0.87[AFR][1000 genomes]
rs1035485	0.87[AFR][1000 genomes]
rs1042994	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs11546180	0.85[AFR][1000 genomes]
rs11739694	1.00[ASN][1000 genomes]
rs11741689	1.00[ASN][1000 genomes]
rs11742549	1.00[CHB][hapmap]
rs11746501	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11747268	1.00[ASN][1000 genomes]
rs11747708	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11948189	1.00[ASN][1000 genomes]
rs11949041	1.00[ASN][1000 genomes]
rs11949753	1.00[ASN][1000 genomes]
rs11950095	1.00[ASN][1000 genomes]
rs11957466	1.00[ASN][1000 genomes]
rs11958256	1.00[ASN][1000 genomes]
rs12188785	1.00[ASN][1000 genomes]
rs12513877	0.87[AFR][1000 genomes]
rs12518781	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12522386	0.87[AFR][1000 genomes]
rs13159762	1.00[ASN][1000 genomes]
rs13168895	1.00[ASN][1000 genomes]
rs13174477	1.00[ASN][1000 genomes]
rs13176857	1.00[CHB][hapmap]
rs13184050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13188849	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs15915	1.00[ASN][1000 genomes]
rs1605739	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1605740	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17709855	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17710502	0.93[YRI][hapmap];0.86[AFR][1000 genomes]
rs17710615	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs17712713	1.00[CHB][hapmap]
rs17767072	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs17773396	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2201293	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs2220785	0.87[AFR][1000 genomes]
rs2408946	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs33921924	0.87[AFR][1000 genomes]
rs34150563	0.87[AFR][1000 genomes]
rs34974449	0.87[AFR][1000 genomes]
rs4699926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4700289	0.87[AFR][1000 genomes]
rs4700297	1.00[ASN][1000 genomes]
rs55827457	0.83[AFR][1000 genomes]
rs56286824	0.87[AFR][1000 genomes]
rs56318521	0.87[AFR][1000 genomes]
rs57844100	0.92[ASN][1000 genomes]
rs59135347	0.87[AFR][1000 genomes]
rs59598546	1.00[ASN][1000 genomes]
rs62366360	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366396	1.00[ASN][1000 genomes]
rs62366397	1.00[ASN][1000 genomes]
rs62366400	1.00[ASN][1000 genomes]
rs62366401	1.00[ASN][1000 genomes]
rs62366402	1.00[ASN][1000 genomes]
rs62366403	1.00[ASN][1000 genomes]
rs62366404	1.00[ASN][1000 genomes]
rs62366441	1.00[ASN][1000 genomes]
rs62366446	1.00[ASN][1000 genomes]
rs62366447	1.00[ASN][1000 genomes]
rs62366448	1.00[ASN][1000 genomes]
rs62367805	0.85[ASN][1000 genomes]
rs6870990	1.00[ASN][1000 genomes]
rs6879330	0.83[AFR][1000 genomes]
rs6882289	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6889999	1.00[ASN][1000 genomes]
rs7701530	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7708381	0.85[AFR][1000 genomes]
rs7721366	0.92[ASN][1000 genomes]
rs7736949	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs963615	1.00[ASN][1000 genomes]

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57735200-57751400	Weak transcription	Psoas Muscle	Psoas
2	chr5:57737000-57747400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr5:57737800-57748600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:57737800-57749000	Weak transcription	Fetal Lung	lung
5	chr5:57741400-57750200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:57742200-57747800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr5:57742600-57747400	Weak transcription	Fetal Brain Female	brain
8	chr5:57742800-57750000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:57742800-57750800	Weak transcription	Aorta	Aorta
10	chr5:57742800-57751400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:57743000-57748800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:57743000-57749400	Weak transcription	NHDF-Ad	bronchial
13	chr5:57743000-57750200	Weak transcription	Pancreas	Pancrea
14	chr5:57743200-57748400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:57743200-57750000	Weak transcription	NHLF	lung
16	chr5:57743600-57748000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:57743800-57748000	Weak transcription	HSMM	muscle
18	chr5:57743800-57748400	Weak transcription	Fetal Kidney	kidney
19	chr5:57743800-57751000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr5:57744000-57750200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr5:57744400-57749200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr5:57745400-57747400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr5:57745600-57748400	Weak transcription	Brain Germinal Matrix	brain
24	chr5:57745800-57747400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr5:57746000-57748600	Genic enhancers	A549	lung
26	chr5:57746000-57751000	Strong transcription	Fetal Muscle Trunk	muscle
27	chr5:57746200-57747400	Genic enhancers	NH-A	brain
28	chr5:57746200-57749600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr5:57746200-57750200	Strong transcription	Fetal Muscle Leg	muscle
30	chr5:57746400-57748000	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr5:57746400-57748800	Enhancers	Placenta	Placenta
32	chr5:57746400-57749200	Weak transcription	Adipose Nuclei	Adipose
33	chr5:57746400-57749400	Weak transcription	HSMMtube	muscle
34	chr5:57746400-57750000	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr5:57746600-57747800	Weak transcription	HMEC	breast
36	chr5:57746600-57748400	Weak transcription	NHEK	skin
37	chr5:57746600-57749200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr5:57746800-57748000	Weak transcription	Osteobl	bone
39	chr5:57746800-57748400	Weak transcription	Fetal Intestine Large	intestine
40	chr5:57746800-57749600	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr5:57746800-57750000	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr5:57746800-57750200	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr5:57746800-57750400	Weak transcription	Fetal Thymus	thymus
44	chr5:57746800-57750800	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr5:57747000-57747400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr5:57747000-57747800	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr5:57747000-57747800	Weak transcription	Liver	Liver
48	chr5:57747000-57748600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr5:57747000-57750400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr5:57747000-57752800	Weak transcription	Fetal Intestine Small	intestine

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