Variant report

Variant	rs55827457
Chromosome Location	chr5:57759749-57759750
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:56592286..56594694-chr5:57759435..57761857,2	MCF-7	breast:
2	chr5:57755924..57758334-chr5:57759314..57760918,2	MCF-7	breast:
3	chr22:22872350..22874493-chr5:57759289..57762269,2	K562	blood:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1035484	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1035485	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1042994	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11546180	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12513877	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12518781	0.80[AFR][1000 genomes]
rs12522386	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs13168504	0.83[AFR][1000 genomes]
rs13184050	0.83[AFR][1000 genomes]
rs13188849	0.83[AFR][1000 genomes]
rs16888201	0.83[AFR][1000 genomes]
rs17709855	0.84[AFR][1000 genomes]
rs17710502	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17710615	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17767072	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2201293	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2220785	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2408946	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs33921924	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34150563	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34974449	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4699926	0.83[AFR][1000 genomes]
rs4700289	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56010771	0.83[AFR][1000 genomes]
rs56286824	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56318521	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59135347	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs62366360	0.84[AFR][1000 genomes]
rs6450474	0.91[EUR][1000 genomes]
rs6879330	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6882289	0.84[AFR][1000 genomes]
rs6890785	0.88[EUR][1000 genomes]
rs7701530	0.83[AFR][1000 genomes]
rs7706545	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7708381	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7736949	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs929818	0.83[AFR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57756800-57762800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr5:57756800-57762800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:57757000-57762600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr5:57757000-57763200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr5:57757000-57765600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:57758200-57760000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:57758400-57762600	Weak transcription	GM12878-XiMat	blood
8	chr5:57758600-57762600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr5:57758600-57762600	Weak transcription	Dnd41	blood
10	chr5:57758600-57762600	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr5:57758600-57762800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:57758600-57762800	Weak transcription	Brain Anterior Caudate	brain
13	chr5:57758600-57763000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr5:57758600-57763200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr5:57758600-57763200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr5:57758600-57763600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr5:57759000-57762600	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links