Variant report

Variant	rs6890785
Chromosome Location	chr5:57763091-57763092
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1035484	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1035485	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1042994	1.00[MEX][hapmap];0.91[MKK][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11546180	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12513877	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12513905	0.82[AMR][1000 genomes]
rs12522386	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16888201	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17710502	1.00[MEX][hapmap];0.96[MKK][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17710615	0.91[GIH][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17767072	0.91[GIH][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2201293	0.89[MEX][hapmap];0.96[MKK][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2220785	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2408946	1.00[MEX][hapmap];0.89[MKK][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs33921924	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34150563	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34974449	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4700289	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55827457	0.88[EUR][1000 genomes]
rs56010771	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs56286824	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56318521	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs59135347	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6450474	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6879330	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72758173	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7706545	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7708381	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7725097	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7736949	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs929818	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57757000-57763200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr5:57757000-57765600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr5:57758600-57763200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:57758600-57763200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr5:57758600-57763600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr5:57762600-57763200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr5:57762600-57763200	Enhancers	Dnd41	blood
8	chr5:57762600-57763200	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr5:57762600-57763400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr5:57762600-57763400	Enhancers	A549	lung
11	chr5:57762800-57763200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:57762800-57763600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:57762800-57763800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr5:57762800-57763800	Enhancers	H1 Cell Line	embryonic stem cell
15	chr5:57763000-57763600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr5:57763000-57771000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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