Variant report

Variant	rs7725097
Chromosome Location	chr5:57769535-57769536
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10042933	0.83[EUR][1000 genomes]
rs1035484	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1035485	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1042994	1.00[ASW][hapmap];0.94[MEX][hapmap];0.91[MKK][hapmap];0.82[AFR][1000 genomes]
rs11546180	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11948948	0.88[EUR][1000 genomes]
rs12513877	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12522386	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs16888201	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17710502	1.00[ASW][hapmap];0.94[MEX][hapmap];0.96[MKK][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs17710615	1.00[ASW][hapmap];0.81[GIH][hapmap];0.94[MEX][hapmap];0.96[MKK][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs17712159	0.86[EUR][1000 genomes]
rs17767072	1.00[ASW][hapmap];0.81[GIH][hapmap];0.94[MEX][hapmap];0.96[MKK][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1848514	0.88[EUR][1000 genomes]
rs1876691	0.81[TSI][hapmap]
rs2201293	1.00[ASW][hapmap];0.83[MEX][hapmap];0.96[MKK][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2220785	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2408946	1.00[ASW][hapmap];0.94[MEX][hapmap];0.89[MKK][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs33921924	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34150563	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34974449	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4700289	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4700300	0.81[TSI][hapmap]
rs55665530	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56010771	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56286824	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56318521	0.83[AFR][1000 genomes]
rs59135347	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6450474	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6879330	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6890785	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72758173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72758189	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72758190	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72758193	0.94[EUR][1000 genomes]
rs72758200	0.88[EUR][1000 genomes]
rs72760204	0.88[EUR][1000 genomes]
rs7706545	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7708381	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7736949	0.91[CEU][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs929818	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7725097	IPO11	cis	cerebellum	SCAN
rs7725097	DEPDC1B	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57763000-57771000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:57766800-57769600	Weak transcription	Monocytes-CD14+_RO01746	blood

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