Variant report

Variant	rs12518781
Chromosome Location	chr5:57747585-57747586
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:57375298..57377194-chr5:57746717..57748968,2	MCF-7	breast:
2	chr5:57480309..57485854-chr5:57746705..57749645,6	MCF-7	breast:
3	chr5:56594281..56596784-chr5:57747106..57749163,2	MCF-7	breast:
4	chr5:57541847..57544684-chr5:57747160..57748861,2	MCF-7	breast:
5	chr5:57534237..57536303-chr5:57746058..57748624,2	MCF-7	breast:
6	chr5:57178104..57180518-chr5:57747477..57749354,2	MCF-7	breast:
7	chr5:57370978..57374867-chr5:57746378..57750088,5	MCF-7	breast:
8	chr5:57554637..57557710-chr5:57746924..57749357,4	MCF-7	breast:
9	chr5:57714527..57717379-chr5:57746221..57748788,2	MCF-7	breast:

No data

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1035484	0.84[AFR][1000 genomes]
rs1035485	0.84[AFR][1000 genomes]
rs1042994	0.94[YRI][hapmap];0.85[AFR][1000 genomes]
rs11546180	0.82[AFR][1000 genomes]
rs11739694	1.00[ASN][1000 genomes]
rs11741689	1.00[ASN][1000 genomes]
rs11742549	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11746501	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11747268	1.00[ASN][1000 genomes]
rs11747708	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11948189	1.00[ASN][1000 genomes]
rs11949041	1.00[ASN][1000 genomes]
rs11949753	1.00[ASN][1000 genomes]
rs11950095	1.00[ASN][1000 genomes]
rs11957466	1.00[ASN][1000 genomes]
rs11958256	1.00[ASN][1000 genomes]
rs12188785	1.00[ASN][1000 genomes]
rs12513877	0.84[AFR][1000 genomes]
rs12522386	0.84[AFR][1000 genomes]
rs13159762	1.00[ASN][1000 genomes]
rs13168504	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13168895	1.00[ASN][1000 genomes]
rs13174477	1.00[ASN][1000 genomes]
rs13176857	1.00[CHB][hapmap]
rs13184050	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13188849	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs15915	1.00[ASN][1000 genomes]
rs1605739	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1605740	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17709855	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17710502	0.89[YRI][hapmap];0.83[AFR][1000 genomes]
rs17710615	0.94[YRI][hapmap];0.84[AFR][1000 genomes]
rs17712713	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17767072	0.94[YRI][hapmap];0.84[AFR][1000 genomes]
rs17773396	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2201293	0.94[YRI][hapmap];0.84[AFR][1000 genomes]
rs2220785	0.84[AFR][1000 genomes]
rs2408946	0.94[YRI][hapmap];0.84[AFR][1000 genomes]
rs33921924	0.84[AFR][1000 genomes]
rs34150563	0.84[AFR][1000 genomes]
rs34974449	0.84[AFR][1000 genomes]
rs4699926	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4700289	0.84[AFR][1000 genomes]
rs4700297	1.00[ASN][1000 genomes]
rs55827457	0.80[AFR][1000 genomes]
rs56286824	0.84[AFR][1000 genomes]
rs56318521	0.84[AFR][1000 genomes]
rs57844100	0.92[ASN][1000 genomes]
rs59135347	0.84[AFR][1000 genomes]
rs59598546	1.00[ASN][1000 genomes]
rs62366360	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366396	1.00[ASN][1000 genomes]
rs62366397	1.00[ASN][1000 genomes]
rs62366400	1.00[ASN][1000 genomes]
rs62366401	1.00[ASN][1000 genomes]
rs62366402	1.00[ASN][1000 genomes]
rs62366403	1.00[ASN][1000 genomes]
rs62366404	1.00[ASN][1000 genomes]
rs62366441	1.00[ASN][1000 genomes]
rs62366446	1.00[ASN][1000 genomes]
rs62366447	1.00[ASN][1000 genomes]
rs62366448	1.00[ASN][1000 genomes]
rs62367805	0.85[ASN][1000 genomes]
rs6870990	1.00[ASN][1000 genomes]
rs6882289	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6889999	1.00[ASN][1000 genomes]
rs7701530	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7708381	0.82[AFR][1000 genomes]
rs7721366	0.92[ASN][1000 genomes]
rs7736949	0.94[YRI][hapmap];0.84[AFR][1000 genomes]
rs963615	1.00[ASN][1000 genomes]

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57735200-57751400	Weak transcription	Psoas Muscle	Psoas
2	chr5:57737800-57748600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:57737800-57749000	Weak transcription	Fetal Lung	lung
4	chr5:57741400-57750200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:57742200-57747800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr5:57742800-57750000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:57742800-57750800	Weak transcription	Aorta	Aorta
8	chr5:57742800-57751400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:57743000-57748800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:57743000-57749400	Weak transcription	NHDF-Ad	bronchial
11	chr5:57743000-57750200	Weak transcription	Pancreas	Pancrea
12	chr5:57743200-57748400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr5:57743200-57750000	Weak transcription	NHLF	lung
14	chr5:57743600-57748000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:57743800-57748000	Weak transcription	HSMM	muscle
16	chr5:57743800-57748400	Weak transcription	Fetal Kidney	kidney
17	chr5:57743800-57751000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr5:57744000-57750200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr5:57744400-57749200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr5:57745600-57748400	Weak transcription	Brain Germinal Matrix	brain
21	chr5:57746000-57748600	Genic enhancers	A549	lung
22	chr5:57746000-57751000	Strong transcription	Fetal Muscle Trunk	muscle
23	chr5:57746200-57749600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr5:57746200-57750200	Strong transcription	Fetal Muscle Leg	muscle
25	chr5:57746400-57748000	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr5:57746400-57748800	Enhancers	Placenta	Placenta
27	chr5:57746400-57749200	Weak transcription	Adipose Nuclei	Adipose
28	chr5:57746400-57749400	Weak transcription	HSMMtube	muscle
29	chr5:57746400-57750000	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr5:57746600-57747800	Weak transcription	HMEC	breast
31	chr5:57746600-57748400	Weak transcription	NHEK	skin
32	chr5:57746600-57749200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr5:57746800-57748000	Weak transcription	Osteobl	bone
34	chr5:57746800-57748400	Weak transcription	Fetal Intestine Large	intestine
35	chr5:57746800-57749600	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr5:57746800-57750000	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr5:57746800-57750200	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr5:57746800-57750400	Weak transcription	Fetal Thymus	thymus
39	chr5:57746800-57750800	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr5:57747000-57747800	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr5:57747000-57747800	Weak transcription	Liver	Liver
42	chr5:57747000-57748600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr5:57747000-57750400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr5:57747000-57752800	Weak transcription	Fetal Intestine Small	intestine
45	chr5:57747200-57748200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr5:57747200-57748800	Strong transcription	Fetal Stomach	stomach
47	chr5:57747200-57749200	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr5:57747200-57749400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr5:57747200-57750000	Weak transcription	Ovary	ovary
50	chr5:57747200-57750200	Weak transcription	Monocytes-CD14+_RO01746	blood

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