Variant report

Variant	rs13168895
Chromosome Location	chr5:57742282-57742283
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10513145	0.81[EUR][1000 genomes]
rs10805507	0.81[EUR][1000 genomes]
rs11739498	0.81[EUR][1000 genomes]
rs11739694	1.00[ASN][1000 genomes]
rs11740846	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11741689	1.00[ASN][1000 genomes]
rs11742549	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11745514	0.82[EUR][1000 genomes]
rs11746501	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11747268	1.00[ASN][1000 genomes]
rs11747708	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11749794	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11948189	1.00[ASN][1000 genomes]
rs11949041	1.00[ASN][1000 genomes]
rs11949753	1.00[ASN][1000 genomes]
rs11950095	1.00[ASN][1000 genomes]
rs11953112	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs11957466	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11958256	1.00[ASN][1000 genomes]
rs11958495	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11959784	0.81[AMR][1000 genomes]
rs12188785	1.00[ASN][1000 genomes]
rs12518781	1.00[ASN][1000 genomes]
rs12522572	0.81[EUR][1000 genomes]
rs13159762	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13166103	0.82[AMR][1000 genomes]
rs13168504	1.00[ASN][1000 genomes]
rs13174477	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13176857	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13184050	0.85[ASN][1000 genomes]
rs13187020	0.82[EUR][1000 genomes]
rs1396503	0.81[EUR][1000 genomes]
rs15915	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1605739	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1605740	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17709263	0.81[EUR][1000 genomes]
rs17709855	1.00[CHB][hapmap]
rs17712713	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17766068	0.82[EUR][1000 genomes]
rs17766240	0.83[EUR][1000 genomes]
rs17773396	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs34415498	0.81[EUR][1000 genomes]
rs35345509	0.80[EUR][1000 genomes]
rs35917227	0.80[EUR][1000 genomes]
rs3914030	0.81[EUR][1000 genomes]
rs4700282	0.81[EUR][1000 genomes]
rs4700283	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs4700297	1.00[ASN][1000 genomes]
rs57844100	0.92[ASN][1000 genomes]
rs59598546	1.00[ASN][1000 genomes]
rs62366360	1.00[ASN][1000 genomes]
rs62366396	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366397	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366400	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366401	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366402	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366403	1.00[ASN][1000 genomes]
rs62366404	1.00[ASN][1000 genomes]
rs62366441	1.00[ASN][1000 genomes]
rs62366446	1.00[ASN][1000 genomes]
rs62366447	1.00[ASN][1000 genomes]
rs62366448	1.00[ASN][1000 genomes]
rs62367805	0.85[ASN][1000 genomes]
rs62368176	0.81[EUR][1000 genomes]
rs62368203	0.80[EUR][1000 genomes]
rs62368206	0.81[EUR][1000 genomes]
rs6870990	1.00[ASN][1000 genomes]
rs6889999	1.00[ASN][1000 genomes]
rs719427	0.82[EUR][1000 genomes]
rs719429	0.82[EUR][1000 genomes]
rs726842	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7721366	0.92[ASN][1000 genomes]
rs963615	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57735200-57751400	Weak transcription	Psoas Muscle	Psoas
2	chr5:57737000-57747400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr5:57737400-57747000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:57737800-57748600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:57737800-57749000	Weak transcription	Fetal Lung	lung
6	chr5:57740400-57742400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:57740400-57743000	Weak transcription	HSMM	muscle
8	chr5:57741200-57744800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:57741200-57745200	Weak transcription	NHEK	skin
10	chr5:57741200-57747000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr5:57741400-57746000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr5:57741400-57750200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr5:57741600-57745800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:57741600-57747200	Weak transcription	Esophagus	oesophagus
15	chr5:57742000-57743000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
16	chr5:57742200-57742800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr5:57742200-57743000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr5:57742200-57743000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr5:57742200-57743200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:57742200-57743200	Strong transcription	HMEC	breast
21	chr5:57742200-57743400	Strong transcription	A549	lung
22	chr5:57742200-57747800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links