Variant report

Variant	rs1605739
Chromosome Location	chr5:57882140-57882141
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10035587	0.90[CEU][hapmap]
rs10071783	0.91[CEU][hapmap]
rs11739694	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11741689	1.00[ASN][1000 genomes]
rs11742549	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11745321	0.91[CEU][hapmap]
rs11746501	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11747268	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11747708	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11948189	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11949041	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11949753	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11950095	1.00[ASN][1000 genomes]
rs11957466	1.00[ASN][1000 genomes]
rs11958256	1.00[ASN][1000 genomes]
rs12188785	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12518781	1.00[ASN][1000 genomes]
rs13159762	1.00[ASN][1000 genomes]
rs13168504	1.00[ASN][1000 genomes]
rs13168895	1.00[ASN][1000 genomes]
rs13174477	1.00[ASN][1000 genomes]
rs13176857	1.00[CHB][hapmap]
rs13184050	0.85[ASN][1000 genomes]
rs15915	1.00[ASN][1000 genomes]
rs1605740	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17709855	1.00[CHB][hapmap]
rs17712683	1.00[CEU][hapmap]
rs17712713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17773396	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4700297	1.00[ASN][1000 genomes]
rs57844100	0.92[ASN][1000 genomes]
rs59598546	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366360	1.00[ASN][1000 genomes]
rs62366396	1.00[ASN][1000 genomes]
rs62366397	1.00[ASN][1000 genomes]
rs62366400	1.00[ASN][1000 genomes]
rs62366401	1.00[ASN][1000 genomes]
rs62366402	1.00[ASN][1000 genomes]
rs62366403	1.00[ASN][1000 genomes]
rs62366404	1.00[ASN][1000 genomes]
rs62366441	1.00[ASN][1000 genomes]
rs62366446	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366447	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366448	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62367805	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6865094	0.90[CEU][hapmap]
rs6870990	1.00[ASN][1000 genomes]
rs6889999	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6890117	0.90[CEU][hapmap]
rs6890362	0.91[CEU][hapmap]
rs6891534	0.91[CEU][hapmap]
rs6895777	0.90[CEU][hapmap]
rs6895889	0.90[CEU][hapmap]
rs7721366	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs963615	1.00[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57881000-57885400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:57882000-57882400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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