Variant report
| Variant | rs11949041 |
|---|---|
| Chromosome Location | chr5:57859092-57859093 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:41)
| rs_ID | r2[population] |
|---|---|
| rs11739694 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11741689 | 1.00[ASN][1000 genomes] |
| rs11746501 | 1.00[ASN][1000 genomes] |
| rs11747268 | 1.00[ASN][1000 genomes] |
| rs11747708 | 1.00[ASN][1000 genomes] |
| rs11948189 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11949753 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11950095 | 1.00[ASN][1000 genomes] |
| rs11957466 | 1.00[ASN][1000 genomes] |
| rs11958256 | 1.00[ASN][1000 genomes] |
| rs12188785 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12518781 | 1.00[ASN][1000 genomes] |
| rs13159762 | 1.00[ASN][1000 genomes] |
| rs13168504 | 1.00[ASN][1000 genomes] |
| rs13168895 | 1.00[ASN][1000 genomes] |
| rs13174477 | 1.00[ASN][1000 genomes] |
| rs13184050 | 0.85[ASN][1000 genomes] |
| rs15915 | 1.00[ASN][1000 genomes] |
| rs1605739 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1605740 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17773396 | 1.00[ASN][1000 genomes] |
| rs4700297 | 1.00[ASN][1000 genomes] |
| rs57844100 | 0.92[ASN][1000 genomes] |
| rs59598546 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62366360 | 1.00[ASN][1000 genomes] |
| rs62366396 | 1.00[ASN][1000 genomes] |
| rs62366397 | 1.00[ASN][1000 genomes] |
| rs62366400 | 1.00[ASN][1000 genomes] |
| rs62366401 | 1.00[ASN][1000 genomes] |
| rs62366402 | 1.00[ASN][1000 genomes] |
| rs62366403 | 1.00[ASN][1000 genomes] |
| rs62366404 | 1.00[ASN][1000 genomes] |
| rs62366441 | 1.00[ASN][1000 genomes] |
| rs62366446 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62366447 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62366448 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62367805 | 0.85[ASN][1000 genomes] |
| rs6870990 | 1.00[ASN][1000 genomes] |
| rs6889999 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7721366 | 0.92[ASN][1000 genomes] |
| rs963615 | 1.00[ASN][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:57859000-57859400 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 2 | chr5:57859000-57859400 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
| 3 | chr5:57859000-57859800 | ZNF genes & repeats | H1 Cell Line | embryonic stem cell |
