Variant report

Variant	rs13159762
Chromosome Location	chr5:57748556-57748557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:57157132..57161136-chr5:57747678..57750826,3	MCF-7	breast:
2	chr5:57176077..57177862-chr5:57748137..57750239,2	MCF-7	breast:
3	chr5:57608550..57610073-chr5:57747902..57750189,2	MCF-7	breast:
4	chr5:57375298..57377194-chr5:57746717..57748968,2	MCF-7	breast:
5	chr5:57480309..57485854-chr5:57746705..57749645,6	MCF-7	breast:
6	chr5:57708135..57711120-chr5:57747586..57749744,2	MCF-7	breast:
7	chr5:56594281..56596784-chr5:57747106..57749163,2	MCF-7	breast:
8	chr5:57541847..57544684-chr5:57747160..57748861,2	MCF-7	breast:
9	chr5:57555431..57557265-chr5:57747866..57749684,2	MCF-7	breast:
10	chr5:57534237..57536303-chr5:57746058..57748624,2	MCF-7	breast:
11	chr5:57077792..57079742-chr5:57748468..57750917,2	MCF-7	breast:
12	chr5:57471335..57473541-chr5:57748277..57749882,2	MCF-7	breast:
13	chr5:57401526..57403510-chr5:57748053..57750408,2	MCF-7	breast:
14	chr5:57178104..57180518-chr5:57747477..57749354,2	MCF-7	breast:
15	chr5:57623367..57625513-chr5:57747779..57749310,2	MCF-7	breast:
16	chr5:57370978..57374867-chr5:57746378..57750088,5	MCF-7	breast:
17	chr5:57666483..57668447-chr5:57747983..57749992,2	MCF-7	breast:
18	chr5:57554637..57557710-chr5:57746924..57749357,4	MCF-7	breast:
19	chr5:57714527..57717379-chr5:57746221..57748788,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GAPT-3	chr5:57748236-57748567	NONHSAT101602

No data

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10513145	0.81[EUR][1000 genomes]
rs10805507	0.81[EUR][1000 genomes]
rs11739498	0.81[EUR][1000 genomes]
rs11739694	1.00[ASN][1000 genomes]
rs11740846	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11741689	1.00[ASN][1000 genomes]
rs11742549	1.00[CHB][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap]
rs11745514	0.82[EUR][1000 genomes]
rs11746501	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11747268	1.00[ASN][1000 genomes]
rs11747708	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11749794	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11948189	1.00[ASN][1000 genomes]
rs11949041	1.00[ASN][1000 genomes]
rs11949753	1.00[ASN][1000 genomes]
rs11950095	1.00[ASN][1000 genomes]
rs11953112	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs11957466	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11958256	1.00[ASN][1000 genomes]
rs11958495	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11959784	0.81[AMR][1000 genomes]
rs12188785	1.00[ASN][1000 genomes]
rs12518781	1.00[ASN][1000 genomes]
rs12522572	0.81[EUR][1000 genomes]
rs13166103	0.82[AMR][1000 genomes]
rs13168504	1.00[ASN][1000 genomes]
rs13168895	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13174477	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13176857	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13184050	0.85[ASN][1000 genomes]
rs13187020	0.82[EUR][1000 genomes]
rs1396503	0.81[EUR][1000 genomes]
rs15915	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1605739	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1605740	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17709263	0.81[EUR][1000 genomes]
rs17709855	1.00[CHB][hapmap]
rs17712713	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17766068	0.82[EUR][1000 genomes]
rs17766240	0.83[EUR][1000 genomes]
rs17773396	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2591918	1.00[LWK][hapmap]
rs34415498	0.81[EUR][1000 genomes]
rs35345509	0.80[EUR][1000 genomes]
rs35917227	0.80[EUR][1000 genomes]
rs3914030	0.81[EUR][1000 genomes]
rs4700282	0.81[EUR][1000 genomes]
rs4700283	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs4700297	1.00[ASN][1000 genomes]
rs57844100	0.92[ASN][1000 genomes]
rs59598546	1.00[ASN][1000 genomes]
rs62366360	1.00[ASN][1000 genomes]
rs62366396	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366397	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366400	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366401	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366402	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366403	1.00[ASN][1000 genomes]
rs62366404	1.00[ASN][1000 genomes]
rs62366441	1.00[ASN][1000 genomes]
rs62366446	1.00[ASN][1000 genomes]
rs62366447	1.00[ASN][1000 genomes]
rs62366448	1.00[ASN][1000 genomes]
rs62367805	0.85[ASN][1000 genomes]
rs62368176	0.81[EUR][1000 genomes]
rs62368203	0.80[EUR][1000 genomes]
rs62368206	0.81[EUR][1000 genomes]
rs6870990	1.00[ASN][1000 genomes]
rs6889999	1.00[ASN][1000 genomes]
rs719427	0.82[EUR][1000 genomes]
rs719429	0.82[EUR][1000 genomes]
rs726842	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7721366	0.92[ASN][1000 genomes]
rs963615	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57735200-57751400	Weak transcription	Psoas Muscle	Psoas
2	chr5:57737800-57748600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:57737800-57749000	Weak transcription	Fetal Lung	lung
4	chr5:57741400-57750200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:57742800-57750000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:57742800-57750800	Weak transcription	Aorta	Aorta
7	chr5:57742800-57751400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:57743000-57748800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:57743000-57749400	Weak transcription	NHDF-Ad	bronchial
10	chr5:57743000-57750200	Weak transcription	Pancreas	Pancrea
11	chr5:57743200-57750000	Weak transcription	NHLF	lung
12	chr5:57743800-57751000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr5:57744000-57750200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr5:57744400-57749200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:57746000-57748600	Genic enhancers	A549	lung
16	chr5:57746000-57751000	Strong transcription	Fetal Muscle Trunk	muscle
17	chr5:57746200-57749600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:57746200-57750200	Strong transcription	Fetal Muscle Leg	muscle
19	chr5:57746400-57748800	Enhancers	Placenta	Placenta
20	chr5:57746400-57749200	Weak transcription	Adipose Nuclei	Adipose
21	chr5:57746400-57749400	Weak transcription	HSMMtube	muscle
22	chr5:57746400-57750000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr5:57746600-57749200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr5:57746800-57749600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr5:57746800-57750000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr5:57746800-57750200	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr5:57746800-57750400	Weak transcription	Fetal Thymus	thymus
28	chr5:57746800-57750800	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr5:57747000-57748600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr5:57747000-57750400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr5:57747000-57752800	Weak transcription	Fetal Intestine Small	intestine
32	chr5:57747200-57748800	Strong transcription	Fetal Stomach	stomach
33	chr5:57747200-57749200	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr5:57747200-57749400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr5:57747200-57750000	Weak transcription	Ovary	ovary
36	chr5:57747200-57750200	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr5:57747400-57748600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr5:57747400-57749200	Strong transcription	Fetal Brain Female	brain
39	chr5:57747400-57750000	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr5:57747400-57750000	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr5:57747400-57750200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr5:57747400-57750200	Weak transcription	Esophagus	oesophagus
43	chr5:57747400-57752400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr5:57747600-57749200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr5:57747600-57749200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr5:57747600-57749200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr5:57747600-57749200	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr5:57747600-57749800	Weak transcription	Brain Hippocampus Middle	brain
49	chr5:57747600-57750200	Weak transcription	Gastric	stomach
50	chr5:57747600-57750200	Weak transcription	Lung	lung

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