Variant report

Variant	rs62366447
Chromosome Location	chr5:57822507-57822508
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10035587	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10056043	0.89[EUR][1000 genomes]
rs10071540	0.89[EUR][1000 genomes]
rs10071783	0.89[EUR][1000 genomes]
rs10074748	0.89[EUR][1000 genomes]
rs10472062	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11739694	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11741689	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11745321	0.89[EUR][1000 genomes]
rs11746501	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11747268	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11747708	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11948189	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11949041	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11949753	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11950095	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11955212	0.84[EUR][1000 genomes]
rs11957466	1.00[ASN][1000 genomes]
rs11958256	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12173136	0.89[EUR][1000 genomes]
rs12187683	0.88[EUR][1000 genomes]
rs12188785	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12518781	1.00[ASN][1000 genomes]
rs13159762	1.00[ASN][1000 genomes]
rs13168504	1.00[ASN][1000 genomes]
rs13168895	1.00[ASN][1000 genomes]
rs13174477	1.00[ASN][1000 genomes]
rs13184050	0.85[ASN][1000 genomes]
rs15915	1.00[ASN][1000 genomes]
rs1605739	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1605740	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17773396	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4700297	1.00[ASN][1000 genomes]
rs57367646	0.89[EUR][1000 genomes]
rs57844100	0.92[ASN][1000 genomes]
rs59598546	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366360	1.00[ASN][1000 genomes]
rs62366396	1.00[ASN][1000 genomes]
rs62366397	1.00[ASN][1000 genomes]
rs62366400	1.00[ASN][1000 genomes]
rs62366401	1.00[ASN][1000 genomes]
rs62366402	1.00[ASN][1000 genomes]
rs62366403	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366404	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366441	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366446	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366448	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62367805	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6865094	0.89[EUR][1000 genomes]
rs6869174	0.88[EUR][1000 genomes]
rs6870990	1.00[ASN][1000 genomes]
rs6889999	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6890117	0.89[EUR][1000 genomes]
rs6890154	0.89[EUR][1000 genomes]
rs6890362	0.89[EUR][1000 genomes]
rs6891534	0.89[EUR][1000 genomes]
rs6895777	0.89[EUR][1000 genomes]
rs6895889	0.89[EUR][1000 genomes]
rs73094379	0.88[EUR][1000 genomes]
rs7712288	0.84[EUR][1000 genomes]
rs7721366	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs963615	1.00[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57821200-57822600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:57821600-57822800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr5:57822000-57822600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links