Variant report

Variant	rs11958256
Chromosome Location	chr5:57773832-57773833
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57773280..57774222-chr5:58145796..58146822,4	MCF-7	breast:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10035587	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs10056043	0.88[EUR][1000 genomes]
rs10071540	0.88[EUR][1000 genomes]
rs10071783	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs10074748	0.88[EUR][1000 genomes]
rs10472062	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11739694	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11741689	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11742549	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11745321	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs11746501	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11747268	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11747708	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11948189	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11949041	1.00[ASN][1000 genomes]
rs11949753	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11950095	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11955212	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11957466	1.00[ASN][1000 genomes]
rs12173136	0.88[EUR][1000 genomes]
rs12187683	0.89[EUR][1000 genomes]
rs12188785	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12518781	1.00[ASN][1000 genomes]
rs13159762	1.00[ASN][1000 genomes]
rs13168504	1.00[ASN][1000 genomes]
rs13168895	1.00[ASN][1000 genomes]
rs13174477	1.00[ASN][1000 genomes]
rs13176857	1.00[CHB][hapmap]
rs13184050	0.85[ASN][1000 genomes]
rs15915	1.00[ASN][1000 genomes]
rs1605739	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1605740	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1605741	0.86[CEU][hapmap]
rs1605742	0.86[CEU][hapmap]
rs17709855	1.00[CHB][hapmap]
rs17712683	0.95[CEU][hapmap]
rs17712713	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17712820	0.86[CEU][hapmap]
rs17773396	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4700297	1.00[ASN][1000 genomes]
rs57211722	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57367646	0.86[EUR][1000 genomes]
rs57844100	0.92[ASN][1000 genomes]
rs59598546	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62366360	1.00[ASN][1000 genomes]
rs62366396	1.00[ASN][1000 genomes]
rs62366397	1.00[ASN][1000 genomes]
rs62366400	1.00[ASN][1000 genomes]
rs62366401	1.00[ASN][1000 genomes]
rs62366402	1.00[ASN][1000 genomes]
rs62366403	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366404	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366441	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366446	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366447	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62366448	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62367805	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6865094	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs6869174	0.88[EUR][1000 genomes]
rs6870990	1.00[ASN][1000 genomes]
rs6889999	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6890117	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs6890154	0.88[EUR][1000 genomes]
rs6890362	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs6891534	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs6895777	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs6895889	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs73094379	0.88[EUR][1000 genomes]
rs7712288	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7721366	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs963615	1.00[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57771400-57777000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:57771600-57774200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:57772400-57774400	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr5:57772600-57774200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr5:57772800-57774400	Enhancers	Primary B cells from peripheral blood	blood
6	chr5:57773000-57774200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr5:57773200-57785400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:57773800-57774200	Enhancers	Primary B cells from cord blood	blood
9	chr5:57773800-57774400	Enhancers	Ovary	ovary

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