Variant report

Variant	rs57211722
Chromosome Location	chr5:57773332-57773333
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57773280..57774222-chr5:58145796..58146822,4	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10035587	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10056043	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10071540	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10071783	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10074748	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10472062	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11739694	0.81[EUR][1000 genomes]
rs11741689	0.89[EUR][1000 genomes]
rs11745321	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11746501	0.85[EUR][1000 genomes]
rs11747268	0.85[EUR][1000 genomes]
rs11747708	0.85[EUR][1000 genomes]
rs11948189	0.81[EUR][1000 genomes]
rs11949753	0.81[EUR][1000 genomes]
rs11950095	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11955212	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11958256	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12173136	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12187683	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17773396	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2307117	0.86[ASN][1000 genomes]
rs4551014	0.89[ASN][1000 genomes]
rs57367646	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62366403	0.88[EUR][1000 genomes]
rs62366404	0.89[EUR][1000 genomes]
rs62366441	0.86[EUR][1000 genomes]
rs6865094	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6869174	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6889999	0.81[EUR][1000 genomes]
rs6890117	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6890154	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6890362	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6891534	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6895777	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6895889	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73094379	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7712288	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7721366	0.80[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57771400-57777000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:57771600-57774200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:57772400-57774400	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr5:57772600-57774200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr5:57772800-57773600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr5:57772800-57774400	Enhancers	Primary B cells from peripheral blood	blood
7	chr5:57773000-57773400	Enhancers	Ovary	ovary
8	chr5:57773000-57773600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:57773000-57774200	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr5:57773200-57785400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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