Variant report

Variant	rs10472062
Chromosome Location	chr5:57779335-57779336
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10035587	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10056043	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10071540	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10071783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10074748	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11739694	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11741689	0.92[EUR][1000 genomes]
rs11742549	0.95[CEU][hapmap];0.93[GIH][hapmap];0.93[TSI][hapmap]
rs11745321	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11746501	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11747268	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11747708	1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11948189	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11949753	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11950095	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11955212	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11958256	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12173136	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12187683	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12188785	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1422230	0.82[CHB][hapmap]
rs1605739	0.91[CEU][hapmap]
rs1605740	0.91[CEU][hapmap]
rs1605741	0.87[CHB][hapmap]
rs1605742	0.87[CHB][hapmap]
rs17712683	0.95[CEU][hapmap]
rs17712713	0.90[CEU][hapmap];0.86[GIH][hapmap];0.91[TSI][hapmap]
rs17712820	0.87[CHB][hapmap]
rs17773396	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2307117	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4551014	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs57211722	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57367646	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62366403	0.92[EUR][1000 genomes]
rs62366404	0.93[EUR][1000 genomes]
rs62366441	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62366446	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62366447	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62366448	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62367805	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6865094	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6869174	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6889999	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6890117	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6890154	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6890362	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6890847	0.88[JPT][hapmap]
rs6891534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6895777	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6895889	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6896790	0.87[CHB][hapmap]
rs73094379	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7712288	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7721366	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7723416	0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405804	chr5:57774995-57779993	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
2	nsv513241	chr5:57776969-57779389	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
3	esv3423189	chr5:57777045-57779543	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	nsv598246	chr5:57777623-57785273	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57773200-57785400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr5:57774200-57779400	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr5:57774200-57780000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr5:57778200-57782800	Enhancers	Primary B cells from peripheral blood	blood
5	chr5:57778400-57779400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
6	chr5:57778600-57779400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:57779000-57780400	Enhancers	Primary B cells from cord blood	blood
8	chr5:57779000-57782400	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr5:57779200-57779800	Enhancers	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links